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(-)Asym./Biol. Unit
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(-) Description

Title :  ANTI-ANTI-IDIOTYPE GH1002 FAB FRAGMENT
 
Authors :  N. Ban, J. Day, X. Wang, S. Ferrone, A. Mcpherson
Date :  30 Nov 95  (Deposition) - 23 Dec 96  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  H,L
Keywords :  Antibody Fab Fragment (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Ban, J. Day, X. Wang, S. Ferrone, A. Mcpherson
Crystal Structure Of An Anti-Anti-Idiotype Shows It To Be Self-Complementary.
J. Mol. Biol. V. 255 617 1996
PubMed-ID: 8568901  |  Reference-DOI: 10.1006/JMBI.1996.0051
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ANTI-ANTI-IDIOTYPE GH1002 FAB FRAGMENT
    Chains: L
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 2 - ANTI-ANTI-IDIOTYPE GH1002 FAB FRAGMENT
    Chains: H
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : HL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1GHF)

(-) Sites  (0, 0)

(no "Site" information available for 1GHF)

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1H:21 -H:95
2H:142 -H:197
3L:23 -L:88
4L:134 -L:194

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Leu L:94 -Pro L:95
2Tyr L:140 -Pro L:141
3Gly H:7 -Pro H:8
4Phe H:148 -Pro H:149
5Glu H:150 -Pro H:151

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GHF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1GHF)

(-) Exons   (0, 0)

(no "Exon" information available for 1GHF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain H from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains d1ghfh1 H:1-115 Immunoglobulin heavy chain variable domain, VH                                                    d1ghfh2 H:116-213 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                    SCOP domains
               CATH domains 1ghfH01 H:1-115 Immunoglobulins                                                                                   1ghfH02 H:116-213 Immunoglobulins                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee.....eeeeee....hhh..eeeeee.....eeeeeee......eee.............hhh.eeeeee....hhh.eeeeeee...........eeeee........eeeee..........eeeeeeeeeee....eeeeehhh...........eee..eeeeeeeeeee.........eeeeee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ghf H   1 VQLQQSGPELKKPGETVKISCKLWYTFTDYGMNWVKQAPGKGLKWMGWIQTNTEEPTYGAEFKGRFAFSLETSAFTAYKQINNLKNEDMATYFCARVEAGFDYWAQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKII 213
                                    10        20  ||    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
                                                 23|                                                                                                                                                                                            
                                                  25                                                                                                                                                                                            


Chain L from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains d1ghfl1 L:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                 d1ghfl2 L:108-211 Immunoglobulin light chain kappa constant domain, CL-kappa                             SCOP domains
               CATH domains 1ghfL01 L:1-107 Immunoglobulins                                                                            1ghfL02 L:108-211 Immunoglobulins                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee.....eeeeee........eeeeee.....eeeee.............eeeeee..eeeeee.........eeeeee............eeee.......eeeee...hhhh.....eeeeeeeee....eeeee...........eeee.........eeeeeeee..hhhh......eeeeee......eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ghf L   1 DIQMTQTTSSLSASLGDRVTISCRESQDISNSLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGTGTDYSLTISNLEQEDFATYFCQQGNTLPYTFGGGTKLEIKRADAAQTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR 211
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 4)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GHF)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1GHF)

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  Sites
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  Cis Peptide Bonds
    Glu H:150 - Pro H:151   [ RasMol ]  
    Gly H:7 - Pro H:8   [ RasMol ]  
    Leu L:94 - Pro L:95   [ RasMol ]  
    Phe H:148 - Pro H:149   [ RasMol ]  
    Tyr L:140 - Pro L:141   [ RasMol ]  
 

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