1GD7 - JenaLib

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Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF A BIFUNCTIONAL PROTEIN (CSAA) WITH EXPORT-RELATED CHAPERONE AND TRNA-BINDING ACTIVITIES.

Authors :   T. Shibata, Y. Inoue, D. G. Vassylyev, S. Kawaguchi, S. Yokoyama, J. Muller, D. Linde, S. Kuramitsu, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   22 Sep 00 (Deposition) - 22 Sep 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Oligonucleotide-Binding Fold, Functional Dimer, Hydrophobic Cavity, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Kawaguchi, J. Muller, D. Linde, S. Kuramitsu, T. Shibata, Y. Inoue, D. G. Vassylyev, S. Yokoyama
The Crystal Structure Of The Ttcsaa Protein: An Export-Related Chaperone From Thermus Thermophilus.
Embo J. V. 20 562 2001
PubMed-ID: 11157762 | Reference-DOI: 10.1093/EMBOJ/20.3.562
(for further references see the PDB file header)

Molecule 1 - CSAA PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15B-TTCSAA
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1GD7)

(no "Site" information available for 1GD7)

(no "SS Bond" information available for 1GD7)

(no "Cis Peptide Bond" information available for 1GD7)

(no "SAP(SNP)/Variant" information available for 1GD7)

(no "PROSITE Motif" information available for 1GD7)

(no "Exon" information available for 1GD7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:109
 aligned with Q9AQH8_THETH | Q9AQH8 from UniProtKB/TrEMBL  Length:109

    Alignment length:109
                                    10        20        30        40        50        60        70        80        90       100         
         Q9AQH8_THETH     1 MTPLEAFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLSEVLVLGVPDEAGRVVLLAPDREVPLGGKVF 109
               SCOP domains d1gd7a_ A: TRBP111 homolog CsaA                                                                               SCOP domains
               CATH domains 1gd7A00 A:1-109 Nucleic acid-binding proteins                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeeeeeeeeee........eeeeee.hhh.eeeeee......hhhhhh..eeeee.....eee..eee..ee.eee.....eeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1gd7 A   1 MTPLEAFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLSEVLVLGVPDEAGRVVLLAPDREVPLGGKVF 109
                                    10        20        30        40        50        60        70        80        90       100

Chain B from PDB  Type:PROTEIN  Length:109
 aligned with Q9AQH8_THETH | Q9AQH8 from UniProtKB/TrEMBL  Length:109

    Alignment length:109
                                    10        20        30        40        50        60        70        80        90       100         
         Q9AQH8_THETH     1 MTPLEAFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLSEVLVLGVPDEAGRVVLLAPDREVPLGGKVF 109
               SCOP domains d1gd7b_ B: TRBP111 homolog CsaA                                                                               SCOP domains
               CATH domains 1gd7B00 B:1-109 Nucleic acid-binding proteins                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeeeeeeeeee........eeeeee.hhh.eeeeee......hhhhhh..eeeee.....eee..eee..ee.eee.....eeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1gd7 B   1 MTPLEAFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLSEVLVLGVPDEAGRVVLLAPDREVPLGGKVF 109
                                    10        20        30        40        50        60        70        80        90       100

Chain C from PDB  Type:PROTEIN  Length:109
 aligned with Q9AQH8_THETH | Q9AQH8 from UniProtKB/TrEMBL  Length:109

    Alignment length:109
                                    10        20        30        40        50        60        70        80        90       100         
         Q9AQH8_THETH     1 MTPLEAFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLSEVLVLGVPDEAGRVVLLAPDREVPLGGKVF 109
               SCOP domains d1gd7c_ C: TRBP111 homolog CsaA                                                                               SCOP domains
               CATH domains 1gd7C00 C:1-109 Nucleic acid-binding proteins                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeeeeeeeeee........eeeeee.hhh.eeeeee......hhhhhh..eeeee.....eee..eee..ee.eee.....eeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1gd7 C   1 MTPLEAFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLSEVLVLGVPDEAGRVVLLAPDREVPLGGKVF 109
                                    10        20        30        40        50        60        70        80        90       100

Chain D from PDB  Type:PROTEIN  Length:109
 aligned with Q9AQH8_THETH | Q9AQH8 from UniProtKB/TrEMBL  Length:109

    Alignment length:109
                                    10        20        30        40        50        60        70        80        90       100         
         Q9AQH8_THETH     1 MTPLEAFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLSEVLVLGVPDEAGRVVLLAPDREVPLGGKVF 109
               SCOP domains d1gd7d_ D: TRBP111 homolog CsaA                                                                               SCOP domains
               CATH domains 1gd7D00 D:1-109 Nucleic acid-binding proteins                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeeeeeeeeee........eeeeee.hhh.eeeeee......hhhhhh..eeeee.....eee..eee..ee.eee.....eeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1gd7 D   1 MTPLEAFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLSEVLVLGVPDEAGRVVLLAPDREVPLGGKVF 109
                                    10        20        30        40        50        60        70        80        90       100

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

)

Organisms( (-)

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Class: All beta proteins (24004)

Fold: OB-fold (1179)

Superfamily: Nucleic acid-binding proteins (590)

Family: Myf domain (20)

Protein domain: TRBP111 homolog CsaA (1)

Thermus thermophilus [TaxId: 274] (1)

1a	d1gd7a_	A:
1b	d1gd7b_	B:
1c	d1gd7c_	C:
1d	d1gd7d_	D:

Asymmetric Unit

Classes(

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Architectures( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: OB fold (Dihydrolipoamide Acetyltransferase, E2P) (1040)

Homologous Superfamily: Nucleic acid-binding proteins (483)

Thermus thermophilus. Organism_taxid: 274. (5)

1a	1gd7A00	A:1-109
1b	1gd7B00	B:1-109
1c	1gd7C00	C:1-109
1d	1gd7D00	D:1-109

(no "Pfam Domain" information available for 1GD7)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q9AQH8_THETH | Q9AQH8)

molecular function
	GO:0003723		RNA binding		Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0000049		tRNA binding		Interacting selectively and non-covalently with transfer RNA.

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Biological Units
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