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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUCOSE OXIDASE FROM ASPERGILLUS NIGER: REFINED AT 2.3 ANGSTROMS RESOLUTION
 
Authors :  H. J. Hecht, K. Kalisz, J. Hendle, R. D. Schmid, D. Schomburg
Date :  27 Aug 92  (Deposition) - 31 Oct 93  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase(Flavoprotein) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. J. Hecht, H. M. Kalisz, J. Hendle, R. D. Schmid, D. Schomburg
Crystal Structure Of Glucose Oxidase From Aspergillus Niger Refined At 2. 3 A Resolution.
J. Mol. Biol. V. 229 153 1993
PubMed-ID: 8421298  |  Reference-DOI: 10.1006/JMBI.1993.1015
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLUCOSE OXIDASE
    Chains: A
    EC Number: 1.1.3.4
    Engineered: YES
    Organism Scientific: ASPERGILLUS NIGER
    Organism Taxid: 5061

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 10)

Asymmetric/Biological Unit (4, 10)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3MAN2Ligand/IonALPHA-D-MANNOSE
4NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:87 , ASN A:89 , ASN A:493 , TYR A:509 , NAG A:602BINDING SITE FOR RESIDUE NAG A 601
02AC2SOFTWAREARG A:337 , GLU A:487 , THR A:488 , ASP A:492 , NAG A:601 , BMA A:613 , HOH A:815BINDING SITE FOR RESIDUE NAG A 602
03AC3SOFTWAREARG A:337 , GLY A:486 , GLU A:487 , NAG A:602 , MAN A:615BINDING SITE FOR RESIDUE BMA A 613
04AC4SOFTWAREGLY A:486 , GLU A:487 , BMA A:613 , MAN A:616BINDING SITE FOR RESIDUE MAN A 615
05AC5SOFTWAREMAN A:615BINDING SITE FOR RESIDUE MAN A 616
06AC6SOFTWAREASN A:355 , GLU A:363 , VAL A:404 , ASN A:407 , HOH A:819BINDING SITE FOR RESIDUE NAG A 604
07AC7SOFTWAREARG A:37 , TYR A:139 , GLN A:142 , ASN A:388 , GLU A:527 , MET A:528 , ASP A:573BINDING SITE FOR RESIDUE NAG A 605
08AC8SOFTWARETYR A:159 , ASN A:161 , CYS A:164BINDING SITE FOR RESIDUE NAG A 608
09AC9SOFTWAREGLY A:127 , GLU A:129 , ASN A:168 , ASP A:533 , ASN A:534BINDING SITE FOR RESIDUE NAG A 609
10BC1SOFTWAREGLY A:26 , GLY A:28 , LEU A:29 , THR A:30 , ILE A:49 , GLU A:50 , SER A:51 , TYR A:68 , PHE A:72 , HIS A:78 , ARG A:95 , GLY A:97 , ASN A:98 , GLY A:99 , GLY A:102 , SER A:103 , ASN A:107 , GLY A:108 , GLY A:109 , THR A:110 , TYR A:249 , VAL A:250 , ALA A:288 , ALA A:289 , GLY A:290 , VAL A:293 , TYR A:515 , HIS A:516 , ASP A:548 , GLY A:549 , HIS A:559 , VAL A:560 , MET A:561 , PHE A:564 , HOH A:835 , HOH A:841 , HOH A:847 , HOH A:848 , HOH A:851BINDING SITE FOR RESIDUE FAD A 600

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:164 -A:206

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ile A:489 -Pro A:490

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GAL)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GMC_OXRED_1PS00623 GMC oxidoreductases signature 1.GOX_ASPNG119-142  1A:97-120
2GMC_OXRED_2PS00624 GMC oxidoreductases signature 2.GOX_ASPNG312-326  1A:290-304

(-) Exons   (0, 0)

(no "Exon" information available for 1GAL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:581
 aligned with GOX_ASPNG | P13006 from UniProtKB/Swiss-Prot  Length:605

    Alignment length:581
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604 
            GOX_ASPNG    25 GIEASLLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHELLNTKLEQWAEEAVARGGFHNTTALLIQYENYRDWIVNHNVAYSELFLDTAGVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGETIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYASMQ 605
               SCOP domains d1gala1 A:3-324,A:521-583 Glucose oxidase                                                                                                                                                                                                                                                                                         d1gala2 A:325-520 Glucose oxidase                                                                                                                                                                   d1gala1 A:3-324,A:521-583 Glucose oxidase                       SCOP domains
               CATH domains 1galA01  [code=3.50.50.60, no name defined]       1galA02                      -----------1galA02          1galA03 A:110-217,A:325-370,A:406-434,A:452-518,A:554-570 Glucose Oxidase, domain 3                         1galA02           1galA01 A:3-52,A:236-324,A:435-451,A:519-553,A:571-583                                   1galA03 Glucose Oxidase, domain 3             -----------------------------------1galA03                      1galA01          1galA03 A:110-217,A:325-370,A:406-434,A:452-518,A:554-570          1galA01                            1galA03          1galA01       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeeee...hhhhhhhhhh.......eeee..................................................................hhhhhhhhh........hhhhhhhhhhh.......hhhhhh............................hhhhhhhhhh................eee..............hhhhh.........eeee...eeeeeeee......eeeeeeeeee..eeeeeee.eeeee......hhhhhhhh......................eee...eeeeeeeee........eeeeeeehhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh....eeeeeeee...eeeeeeee......eeeee.........eeee......hhhhhhhhhhhhhhhhhh........eeeeee..........hhhhhhh.....................................eee..............hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------GMC_OXRED_1             -------------------------------------------------------------------------------------------------------------------------------------------------------------------------GMC_OXRED_2    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gal A   3 GIEASLLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHELLNTKLEQWAEEAVARGGFHNTTALLIQYENYRDWIVNHNVAYSELFLDTAGVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGETIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYASMQ 583
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Few Secondary Structures (1120)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GAL)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (GOX_ASPNG | P13006)
molecular function
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0046562    glucose oxidase activity    Catalysis of the reaction: beta-D-glucose + O2 = D-glucono-1,5-lactone + H2O2.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GOX_ASPNG | P13006: 1cf3 3qvp 3qvr

(-) Related Entries Specified in the PDB File

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