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(-) Description

Title :  FRAGMENT OF FUSION PROTEIN FROM NEWCASTLE DISEASE VIRUS
 
Authors :  M. C. Lawrence, B. J. Smith
Date :  01 Nov 00  (Deposition) - 27 Feb 02  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Fusion Protein, Ndv, Newcastle Disease Virus, Paramyxovirus, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Chen, J. J. Gorman, J. Mckimm-Breschkin, L. J. Lawrence, P. A. Tulloch, B. J. Smith, P. M. Colman, M. C. Lawrence
The Structure Of The Fusion Glycoprotein Of Newcastle Disease Virus Suggests A Novel Paradigm For The Molecular Mechanism Of Membrane Fusion.
Structure V. 9 255 2001
PubMed-ID: 11286892  |  Reference-DOI: 10.1016/S0969-2126(01)00581-0

(-) Compounds

Molecule 1 - FUSION PROTEIN
    Chains: A, B, C, D, E, F
    Fragment: FULL-LENGTH ECTODOMAIN (RESIDUES L32-R501) FOLLOWED BY C- MYC PURIFICATION TAG
    Organism Scientific: NEWCASTLE DISEASE VIRUS
    Organism Taxid: 11176
    Strain: QUEENSLAND STRAIN, V4 ISOLATE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 21)

Asymmetric Unit (2, 21)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2NAG20Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2NAG11Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (1, 9)
No.NameCountTypeFull Name
1BMA-1Ligand/IonBETA-D-MANNOSE
2NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:85 , THR A:89 , SER A:278 , GLN A:279 , NAG A:852BINDING SITE FOR RESIDUE NAG A 851
02AC2SOFTWARESER A:278 , GLN A:279 , NAG A:851BINDING SITE FOR RESIDUE NAG A 852
03AC3SOFTWAREGLN A:445 , ASN A:447 , NAG A:4472BINDING SITE FOR RESIDUE NAG A 4471
04AC4SOFTWARENAG A:4471 , BMA A:4473BINDING SITE FOR RESIDUE NAG A 4472
05AC5SOFTWARENAG A:4472 , THR B:93 , TYR C:239 , ARG D:400BINDING SITE FOR RESIDUE BMA A 4473
06AC6SOFTWAREASN B:85 , GLN B:279 , NAG B:852BINDING SITE FOR RESIDUE NAG B 851
07AC7SOFTWARESER B:278 , GLN B:279 , NAG B:851BINDING SITE FOR RESIDUE NAG B 852
08AC8SOFTWAREASN B:191 , NAG B:1912BINDING SITE FOR RESIDUE NAG B 1911
09AC9SOFTWAREASN B:191 , NAG B:1911BINDING SITE FOR RESIDUE NAG B 1912
10BC1SOFTWARELEU C:66 , ASN C:85 , NAG C:852BINDING SITE FOR RESIDUE NAG C 851
11BC2SOFTWARESER C:278 , GLN C:279 , NAG C:851BINDING SITE FOR RESIDUE NAG C 852
12BC3SOFTWARELYS C:446 , ASN C:447BINDING SITE FOR RESIDUE NAG C 4471
13BC4SOFTWAREASN D:85 , GLN D:279 , NAG D:852BINDING SITE FOR RESIDUE NAG D 851
14BC5SOFTWARESER D:278 , GLN D:279 , NAG D:851BINDING SITE FOR RESIDUE NAG D 852
15BC6SOFTWAREASN D:191BINDING SITE FOR RESIDUE NAG D 1911
16BC7SOFTWAREASN E:85 , GLN E:279 , NAG E:852BINDING SITE FOR RESIDUE NAG E 851
17BC8SOFTWARESER E:278 , GLN E:279 , NAG E:851BINDING SITE FOR RESIDUE NAG E 852
18BC9SOFTWARELYS E:446 , ASN E:447BINDING SITE FOR RESIDUE NAG E 4471
19CC1SOFTWAREASN F:85 , THR F:89 , NAG F:852BINDING SITE FOR RESIDUE NAG F 851
20CC2SOFTWARESER F:278 , GLN F:279 , NAG F:851BINDING SITE FOR RESIDUE NAG F 852
21CC3SOFTWAREASP F:188 , ASN F:191BINDING SITE FOR RESIDUE NAG F 1911

(-) SS Bonds  (30, 30)

Asymmetric Unit
No.Residues
1A:76 -A:199
2A:338 -A:347
3A:362 -A:370
4A:394 -A:399
5A:401 -A:424
6B:76 -B:199
7B:338 -B:347
8B:362 -B:370
9B:394 -B:399
10B:401 -B:424
11C:76 -C:199
12C:338 -C:347
13C:362 -C:370
14C:394 -C:399
15C:401 -C:424
16D:76 -D:199
17D:338 -D:347
18D:362 -D:370
19D:394 -D:399
20D:401 -D:424
21E:76 -E:199
22E:338 -E:347
23E:362 -E:370
24E:394 -E:399
25E:401 -E:424
26F:76 -F:199
27F:338 -F:347
28F:362 -F:370
29F:394 -F:399
30F:401 -F:424

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1G5G)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1G5G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1G5G)

(-) Exons   (0, 0)

(no "Exon" information available for 1G5G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:357
 aligned with FUS_NDVD | P35936 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:422
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452  
             FUS_NDVD    33 DGRPLAAAGIVVTGDKAVNIYTSSQTGSIIIKLLPNMPKDKEACAKAPLEAYNRTLTTLLTPLGDSIRRIQESVTTSGGGKQGRLIGAIIGGVALGVATAAQITAASALIQANQNAANILRLKESIAATNEAVHEVTDGLSQLAVAVGKMQQFVNDQFNKTAQELDCIKITQQVGVELNLYLTELTTVFGPQITSPALTQLTIQALYNLAGGNMDYLLTKLGVGNNQLSSLIGSGLITGNPILYDSQTQLLGIQVTLPSVGNLNNMRATYLETLSVSTTKGFASALVPKVVTQVGSVIEELDTSYCIETDLDLYCTRIVTFPMSPGIYSCLSGNTSACMYSKTEGALTTPYMTLKGSVIANCKMTTCRCADPPGIISQNYGEAVSLIDRQSCNILSLDGITLRLSGEFDATYQKNISIQDSQ 454
               SCOP domains d1g5ga1 A:33-66,A:224-454         d1g5ga2 A:67-223 Stalk of the ectodomai                                                                 n of NDV fusion glycoprotein                         d1g5ga1 A:33-66,A:224-454 Head and neck region of the ectodomain of NDV fusion glycoprotein                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1g5gA03 A:378-437                                           ----------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh..eeeeeeeeeee......eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-----------------------------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhh..ee.eeeee....eeeeee.....eeeeeeeeeeeee................eeee.....eee....eee...eeee....ee..hhhhhhhhh..................eee....eee................................................eeee.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g5g A  33 DGRPLAAAGIVVTGDKAVNIYTSSQTGSIIIKLLPNMPKDKEACAKAPLEAYNRTLTTLLTPLGDSIRRIQES-----------------------------------------------------------------GLSQLAVAVGKMQQFVNDQFNKTAQELDCIKITQQVGVELNLYLTELTTVFGPQITSPALTQLTIQALYNLAGGNMDYLLTKLGVGNNQLSSLISSGLITGNPILYDSQTQLLGIQVTLPSVGNLNNMRATYLETLSVSTTKGFASALVPKVVTQVGSVIEELDTSYCIETDLDLYCTRIVTFPMSPGIYSCLSGNTSACMYSKTEGALTTPYMTLKGSVIANCKMTTCRCADPPGIISQNYGEAVSLIDRQSCNILSLDGITLRLSGEFDATYQKNISIQDSQ 454
                                    42        52        62        72        82        92       102  |      -         -         -         -         -         -       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452  
                                                                                                  105                                                               171                                                                                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:357
 aligned with FUS_NDVD | P35936 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:422
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452  
             FUS_NDVD    33 DGRPLAAAGIVVTGDKAVNIYTSSQTGSIIIKLLPNMPKDKEACAKAPLEAYNRTLTTLLTPLGDSIRRIQESVTTSGGGKQGRLIGAIIGGVALGVATAAQITAASALIQANQNAANILRLKESIAATNEAVHEVTDGLSQLAVAVGKMQQFVNDQFNKTAQELDCIKITQQVGVELNLYLTELTTVFGPQITSPALTQLTIQALYNLAGGNMDYLLTKLGVGNNQLSSLIGSGLITGNPILYDSQTQLLGIQVTLPSVGNLNNMRATYLETLSVSTTKGFASALVPKVVTQVGSVIEELDTSYCIETDLDLYCTRIVTFPMSPGIYSCLSGNTSACMYSKTEGALTTPYMTLKGSVIANCKMTTCRCADPPGIISQNYGEAVSLIDRQSCNILSLDGITLRLSGEFDATYQKNISIQDSQ 454
               SCOP domains d1g5gb1 B:33-66,B:224-454         d1g5gb2 B:67-223 Stalk of the ectodomai                                                                 n of NDV fusion glycoprotein                         d1g5gb1 B:33-66,B:224-454 Head and neck region of the ectodomain of NDV fusion glycoprotein                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1g5gB03 B:378-437                                           ----------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh..eeeeeeeeeee.....eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-----------------------------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhh..eeeeeeee....eeeeeee....eeeeeeeeeeeee................eeeee..eeeee....eee...eeee....ee..hhhhhhhhh.........................eee.......ee...............eee......eee....eee.....eeee.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g5g B  33 DGRPLAAAGIVVTGDKAVNIYTSSQTGSIIIKLLPNMPKDKEACAKAPLEAYNRTLTTLLTPLGDSIRRIQES-----------------------------------------------------------------GLSQLAVAVGKMQQFVNDQFNKTAQELDCIKITQQVGVELNLYLTELTTVFGPQITSPALTQLTIQALYNLAGGNMDYLLTKLGVGNNQLSSLISSGLITGNPILYDSQTQLLGIQVTLPSVGNLNNMRATYLETLSVSTTKGFASALVPKVVTQVGSVIEELDTSYCIETDLDLYCTRIVTFPMSPGIYSCLSGNTSACMYSKTEGALTTPYMTLKGSVIANCKMTTCRCADPPGIISQNYGEAVSLIDRQSCNILSLDGITLRLSGEFDATYQKNISIQDSQ 454
                                    42        52        62        72        82        92       102  |      -         -         -         -         -         -       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452  
                                                                                                  105                                                               171                                                                                                                                                                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:357
 aligned with FUS_NDVD | P35936 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:422
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452  
             FUS_NDVD    33 DGRPLAAAGIVVTGDKAVNIYTSSQTGSIIIKLLPNMPKDKEACAKAPLEAYNRTLTTLLTPLGDSIRRIQESVTTSGGGKQGRLIGAIIGGVALGVATAAQITAASALIQANQNAANILRLKESIAATNEAVHEVTDGLSQLAVAVGKMQQFVNDQFNKTAQELDCIKITQQVGVELNLYLTELTTVFGPQITSPALTQLTIQALYNLAGGNMDYLLTKLGVGNNQLSSLIGSGLITGNPILYDSQTQLLGIQVTLPSVGNLNNMRATYLETLSVSTTKGFASALVPKVVTQVGSVIEELDTSYCIETDLDLYCTRIVTFPMSPGIYSCLSGNTSACMYSKTEGALTTPYMTLKGSVIANCKMTTCRCADPPGIISQNYGEAVSLIDRQSCNILSLDGITLRLSGEFDATYQKNISIQDSQ 454
               SCOP domains d1g5gc1 C:33-66,C:224-454         d1g5gc2 C:67-223 Stalk of the ectodomai                                                                 n of NDV fusion glycoprotein                         d1g5gc1 C:33-66,C:224-454 Head and neck region of the ectodomain of NDV fusion glycoprotein                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1g5gC03 C:378-437                                           ----------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeeeee.....eeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-----------------------------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhh..eeeeeeee....eeeeeee....eeeeeeeeeeeee................eeee.....eee....eee...eeee....ee..hhhhhhhhh..................eeee..eeee......eee........................eeee...eee...eeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g5g C  33 DGRPLAAAGIVVTGDKAVNIYTSSQTGSIIIKLLPNMPKDKEACAKAPLEAYNRTLTTLLTPLGDSIRRIQES-----------------------------------------------------------------GLSQLAVAVGKMQQFVNDQFNKTAQELDCIKITQQVGVELNLYLTELTTVFGPQITSPALTQLTIQALYNLAGGNMDYLLTKLGVGNNQLSSLISSGLITGNPILYDSQTQLLGIQVTLPSVGNLNNMRATYLETLSVSTTKGFASALVPKVVTQVGSVIEELDTSYCIETDLDLYCTRIVTFPMSPGIYSCLSGNTSACMYSKTEGALTTPYMTLKGSVIANCKMTTCRCADPPGIISQNYGEAVSLIDRQSCNILSLDGITLRLSGEFDATYQKNISIQDSQ 454
                                    42        52        62        72        82        92       102  |      -         -         -         -         -         -       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452  
                                                                                                  105                                                               171                                                                                                                                                                                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:357
 aligned with FUS_NDVD | P35936 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:422
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452  
             FUS_NDVD    33 DGRPLAAAGIVVTGDKAVNIYTSSQTGSIIIKLLPNMPKDKEACAKAPLEAYNRTLTTLLTPLGDSIRRIQESVTTSGGGKQGRLIGAIIGGVALGVATAAQITAASALIQANQNAANILRLKESIAATNEAVHEVTDGLSQLAVAVGKMQQFVNDQFNKTAQELDCIKITQQVGVELNLYLTELTTVFGPQITSPALTQLTIQALYNLAGGNMDYLLTKLGVGNNQLSSLIGSGLITGNPILYDSQTQLLGIQVTLPSVGNLNNMRATYLETLSVSTTKGFASALVPKVVTQVGSVIEELDTSYCIETDLDLYCTRIVTFPMSPGIYSCLSGNTSACMYSKTEGALTTPYMTLKGSVIANCKMTTCRCADPPGIISQNYGEAVSLIDRQSCNILSLDGITLRLSGEFDATYQKNISIQDSQ 454
               SCOP domains d1g5gd1 D:33-66,D:224-454         d1g5gd2 D:67-223 Stalk of the ectodomai                                                                 n of NDV fusion glycoprotein                         d1g5gd1 D:33-66,D:224-454 Head and neck region of the ectodomain of NDV fusion glycoprotein                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1g5gD03 D:378-437                                           ----------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.eeeeeeeeeee......eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-----------------------------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhh..eeeeeeee....eeeeeee....eeeeeeeeeeeee................eeee.....eee....eee...eeee....ee..hhhhhhhhh..................eee....eee......eee....ee...................eee...........eeee.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g5g D  33 DGRPLAAAGIVVTGDKAVNIYTSSQTGSIIIKLLPNMPKDKEACAKAPLEAYNRTLTTLLTPLGDSIRRIQES-----------------------------------------------------------------GLSQLAVAVGKMQQFVNDQFNKTAQELDCIKITQQVGVELNLYLTELTTVFGPQITSPALTQLTIQALYNLAGGNMDYLLTKLGVGNNQLSSLISSGLITGNPILYDSQTQLLGIQVTLPSVGNLNNMRATYLETLSVSTTKGFASALVPKVVTQVGSVIEELDTSYCIETDLDLYCTRIVTFPMSPGIYSCLSGNTSACMYSKTEGALTTPYMTLKGSVIANCKMTTCRCADPPGIISQNYGEAVSLIDRQSCNILSLDGITLRLSGEFDATYQKNISIQDSQ 454
                                    42        52        62        72        82        92       102  |      -         -         -         -         -         -       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452  
                                                                                                  105                                                               171                                                                                                                                                                                                                                                                                           


Chain E from PDB  Type:PROTEIN  Length:357
 aligned with FUS_NDVD | P35936 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:422
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452  
             FUS_NDVD    33 DGRPLAAAGIVVTGDKAVNIYTSSQTGSIIIKLLPNMPKDKEACAKAPLEAYNRTLTTLLTPLGDSIRRIQESVTTSGGGKQGRLIGAIIGGVALGVATAAQITAASALIQANQNAANILRLKESIAATNEAVHEVTDGLSQLAVAVGKMQQFVNDQFNKTAQELDCIKITQQVGVELNLYLTELTTVFGPQITSPALTQLTIQALYNLAGGNMDYLLTKLGVGNNQLSSLIGSGLITGNPILYDSQTQLLGIQVTLPSVGNLNNMRATYLETLSVSTTKGFASALVPKVVTQVGSVIEELDTSYCIETDLDLYCTRIVTFPMSPGIYSCLSGNTSACMYSKTEGALTTPYMTLKGSVIANCKMTTCRCADPPGIISQNYGEAVSLIDRQSCNILSLDGITLRLSGEFDATYQKNISIQDSQ 454
               SCOP domains d1g5ge1 E:33-66,E:224-454         d1g5ge2 E:67-223 Stalk of the ectodomai                                                                 n of NDV fusion glycoprotein                         d1g5ge1 E:33-66,E:224-454 Head and neck region of the ectodomain of NDV fusion glycoprotein                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1g5gE03 E:378-437                                           ----------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh..eeeeeeeeeee.....eeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-----------------------------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhh..eeeeeeee....eeeeeee....eeeeeeeeeeeee................ee........ee....eee...eeee....ee..hhhhhhhhh.........................eee......ee......ee........eee......eeee..eeee.....eeee.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g5g E  33 DGRPLAAAGIVVTGDKAVNIYTSSQTGSIIIKLLPNMPKDKEACAKAPLEAYNRTLTTLLTPLGDSIRRIQES-----------------------------------------------------------------GLSQLAVAVGKMQQFVNDQFNKTAQELDCIKITQQVGVELNLYLTELTTVFGPQITSPALTQLTIQALYNLAGGNMDYLLTKLGVGNNQLSSLISSGLITGNPILYDSQTQLLGIQVTLPSVGNLNNMRATYLETLSVSTTKGFASALVPKVVTQVGSVIEELDTSYCIETDLDLYCTRIVTFPMSPGIYSCLSGNTSACMYSKTEGALTTPYMTLKGSVIANCKMTTCRCADPPGIISQNYGEAVSLIDRQSCNILSLDGITLRLSGEFDATYQKNISIQDSQ 454
                                    42        52        62        72        82        92       102  |      -         -         -         -         -         -       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452  
                                                                                                  105                                                               171                                                                                                                                                                                                                                                                                           


Chain F from PDB  Type:PROTEIN  Length:357
 aligned with FUS_NDVD | P35936 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:422
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452  
             FUS_NDVD    33 DGRPLAAAGIVVTGDKAVNIYTSSQTGSIIIKLLPNMPKDKEACAKAPLEAYNRTLTTLLTPLGDSIRRIQESVTTSGGGKQGRLIGAIIGGVALGVATAAQITAASALIQANQNAANILRLKESIAATNEAVHEVTDGLSQLAVAVGKMQQFVNDQFNKTAQELDCIKITQQVGVELNLYLTELTTVFGPQITSPALTQLTIQALYNLAGGNMDYLLTKLGVGNNQLSSLIGSGLITGNPILYDSQTQLLGIQVTLPSVGNLNNMRATYLETLSVSTTKGFASALVPKVVTQVGSVIEELDTSYCIETDLDLYCTRIVTFPMSPGIYSCLSGNTSACMYSKTEGALTTPYMTLKGSVIANCKMTTCRCADPPGIISQNYGEAVSLIDRQSCNILSLDGITLRLSGEFDATYQKNISIQDSQ 454
               SCOP domains d1g5gf1 F:33-66,F:224-454         d1g5gf2 F:67-223 Stalk of the ectodomai                                                                 n of NDV fusion glycoprotein                         d1g5gf1 F:33-66,F:224-454 Head and neck region of the ectodomain of NDV fusion glycoprotein                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1g5gF03 F:378-437                                           ----------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeeeee....eeeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-----------------------------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhh..eeeeeeee....eeeeeeee...eeeeeeeeeeeee................eeee......ee....eee....eee....ee..hhhhhhhhh..................eee....eee......eee...............eee.......eee.........eeeeee.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g5g F  33 DGRPLAAAGIVVTGDKAVNIYTSSQTGSIIIKLLPNMPKDKEACAKAPLEAYNRTLTTLLTPLGDSIRRIQES-----------------------------------------------------------------GLSQLAVAVGKMQQFVNDQFNKTAQELDCIKITQQVGVELNLYLTELTTVFGPQITSPALTQLTIQALYNLAGGNMDYLLTKLGVGNNQLSSLISSGLITGNPILYDSQTQLLGIQVTLPSVGNLNNMRATYLETLSVSTTKGFASALVPKVVTQVGSVIEELDTSYCIETDLDLYCTRIVTFPMSPGIYSCLSGNTSACMYSKTEGALTTPYMTLKGSVIANCKMTTCRCADPPGIISQNYGEAVSLIDRQSCNILSLDGITLRLSGEFDATYQKNISIQDSQ 454
                                    42        52        62        72        82        92       102  |      -         -         -         -         -         -       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452  
                                                                                                  105                                                               171
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(-) SCOP Domains  (2, 12)

Asymmetric Unit
(-)
Class: Coiled coil proteins (689)
(-)
Class: Membrane and cell surface proteins and peptides (2046)

(-) CATH Domains  (1, 6)

Asymmetric Unit
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Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (FUS_NDVD | P35936)
biological process
    GO:0019064    fusion of virus membrane with host plasma membrane    Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
    GO:0006948    induction by virus of host cell-cell fusion    The process of syncytia-forming cell-cell fusion, caused by a virus.
    GO:0039663    membrane fusion involved in viral entry into host cell    Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
cellular component
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

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