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(-) Description

Title :  GP31 CO-CHAPERONIN FROM BACTERIOPHAGE T4
 
Authors :  J. F. Hunt, S. M. Van Der Vies, L. Henry, J. Deisenhofer
Date :  27 Mar 98  (Deposition) - 26 Aug 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G
Biol. Unit 1:  A,B,C,D,E,F,G  (1x)
Biol. Unit 2:  A,B,C,D,E,F,G  (2x)
Keywords :  Chaperone, Co-Chaperonin, Groes, In Vivo Protein Folding, Bacteriophage T4 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. F. Hunt, S. M. Van Der Vies, L. Henry, J. Deisenhofer
Structural Adaptations In The Specialized Bacteriophage T4 Co-Chaperonin Gp31 Expand The Size Of The Anfinsen Cage.
Cell(Cambridge, Mass. ) V. 90 361 1997
PubMed-ID: 9244309  |  Reference-DOI: 10.1016/S0092-8674(00)80343-8
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GP31
    Cellular Location: CYTOPLASM
    Chains: A, B, C, D, E, F, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cellular Location: CYTOPLASM
    Expression System Gene: GROES
    Expression System Plasmid: PSV25
    Expression System Strain: MC1009
    Expression System Taxid: 562
    Expression System Vector: PBAD22
    Expression System Vector Type: PLASMID
    Gene: 31
    Organ: BRAIN
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665

 Structural Features

(-) Chains, Units

  1234567
Asymmetric Unit : ABCDEFG
Biological Unit 1 (1x): ABCDEFG
Biological Unit 2 (2x): ABCDEFG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 30)

Asymmetric Unit (2, 30)
No.NameCountTypeFull Name
1K11Ligand/IonPOTASSIUM ION
2PO419Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 19)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
2PO419Ligand/IonPHOSPHATE ION
Biological Unit 2 (1, 38)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
2PO438Ligand/IonPHOSPHATE ION

(-) Sites  (31, 31)

Asymmetric Unit (31, 31)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPO4 A:1162 , HOH A:1200 , GLY F:38 , LYS F:39 , ARG F:40 , HOH F:360 , HOH F:365 , LYS G:39 , PO4 G:1154 , K G:1182BINDING SITE FOR RESIDUE PO4 A 151
02AC2SOFTWARELEU A:35 , GLN E:42BINDING SITE FOR RESIDUE K A 181
03AC3SOFTWARELYS A:39 , PO4 A:1153 , K A:1183 , PO4 B:1163 , HOH B:1203 , GLY E:38 , LYS E:39 , ARG E:40 , HOH E:293 , HOH E:298BINDING SITE FOR RESIDUE PO4 B 151
04AC4SOFTWARELEU B:35 , GLN D:42BINDING SITE FOR RESIDUE K B 181
05AC5SOFTWARELYS B:39 , PO4 B:1152 , K B:1184 , PO4 C:1164 , HOH C:1191 , GLY D:38 , LYS D:39 , ARG D:40 , HOH D:226 , HOH D:231BINDING SITE FOR RESIDUE PO4 C 151
06AC6SOFTWARELEU C:35 , GLN C:42 , PO4 C:1171 , HOH C:1226BINDING SITE FOR RESIDUE K C 181
07AC7SOFTWAREK B:1184 , GLY C:38 , LYS C:39 , ARG C:40 , PO4 C:1151 , PO4 C:1164 , HOH C:1197 , HOH C:1201 , HOH D:220BINDING SITE FOR RESIDUE PO4 D 151
08AC8SOFTWAREGLN B:42 , PO4 B:1172 , LEU D:35BINDING SITE FOR RESIDUE K D 181
09AC9SOFTWAREK A:1183 , GLY B:38 , LYS B:39 , ARG B:40 , PO4 B:1152 , PO4 B:1163 , HOH B:1209 , HOH B:1213 , LYS D:39 , HOH E:287BINDING SITE FOR RESIDUE PO4 E 151
10BC1SOFTWAREGLN A:42 , PO4 A:1173 , LEU E:35BINDING SITE FOR RESIDUE K E 181
11BC2SOFTWAREGLY A:38 , LYS A:39 , ARG A:40 , PO4 A:1153 , PO4 A:1162 , HOH A:1206 , HOH A:1209 , LYS E:39 , HOH F:354 , K G:1182BINDING SITE FOR RESIDUE PO4 F 151
12BC3SOFTWARELEU F:35 , GLN G:42 , PO4 G:1174BINDING SITE FOR RESIDUE K F 181
13BC4SOFTWARELYS F:39 , K F:1181 , GLY G:38 , LYS G:39 , ARG G:40 , PO4 G:1154 , PO4 G:1161 , HOH G:1206 , HOH G:1212 , HOH G:1217BINDING SITE FOR RESIDUE PO4 G 151
14BC5SOFTWAREGLN F:42 , LEU G:35 , PO4 G:1174BINDING SITE FOR RESIDUE K G 181
15BC6SOFTWAREK B:1184 , LYS C:39 , HOH C:1231 , PO4 D:151 , HOH D:233BINDING SITE FOR RESIDUE PO4 C 1151
16BC7SOFTWAREK A:1183 , LYS B:39 , K B:1184 , HOH B:1246 , PO4 C:151 , LYS D:39 , PO4 E:151 , HOH E:300BINDING SITE FOR RESIDUE PO4 B 1152
17BC8SOFTWARELYS A:39 , K A:1183 , HOH A:1246 , PO4 B:151 , LYS E:39 , HOH E:333 , PO4 F:151 , HOH F:367 , K G:1182BINDING SITE FOR RESIDUE PO4 A 1153
18BC9SOFTWAREPO4 A:151 , LYS F:39 , HOH F:400 , K F:1181 , LYS G:39 , PO4 G:151 , HOH G:1186 , HOH G:1219 , HOH G:1245BINDING SITE FOR RESIDUE PO4 G 1154
19CC1SOFTWAREARG G:40 , PO4 G:151 , HOH G:1202 , HOH G:1206 , HOH G:1212BINDING SITE FOR RESIDUE PO4 G 1161
20CC2SOFTWAREGLY A:38 , ARG A:40 , PO4 A:151 , HOH A:1196 , HOH A:1200 , HOH A:1206 , GLY F:38 , ARG F:40 , VAL F:41 , PO4 F:151 , HOH F:349 , HOH F:354 , HOH F:360BINDING SITE FOR RESIDUE PO4 A 1162
21CC3SOFTWAREGLY B:38 , ARG B:40 , VAL B:41 , PO4 B:151 , HOH B:1199 , HOH B:1203 , HOH B:1209 , GLY E:38 , ARG E:40 , VAL E:41 , PO4 E:151 , HOH E:282 , HOH E:287 , HOH E:293BINDING SITE FOR RESIDUE PO4 B 1163
22CC4SOFTWAREGLY C:38 , ARG C:40 , VAL C:41 , PO4 C:151 , HOH C:1187 , HOH C:1191 , HOH C:1197 , GLY D:38 , ARG D:40 , PO4 D:151 , HOH D:215 , HOH D:220 , HOH D:226BINDING SITE FOR RESIDUE PO4 C 1164
23CC5SOFTWAREGLN C:42 , K C:181BINDING SITE FOR RESIDUE PO4 C 1171
24CC6SOFTWAREGLN B:42 , ILE D:37 , GLN D:42 , K D:181BINDING SITE FOR RESIDUE PO4 B 1172
25CC7SOFTWAREGLN A:42 , GLN E:42 , K E:181BINDING SITE FOR RESIDUE PO4 A 1173
26CC8SOFTWAREILE F:37 , GLN F:42 , K F:181 , GLN G:42 , K G:181BINDING SITE FOR RESIDUE PO4 G 1174
27CC9SOFTWAREPO4 G:151 , PO4 G:1154 , HOH G:1215BINDING SITE FOR RESIDUE K F 1181
28DC1SOFTWAREPO4 A:151 , PO4 A:1153 , PO4 F:151 , HOH F:363 , HOH G:1185BINDING SITE FOR RESIDUE K G 1182
29DC2SOFTWAREPO4 A:1153 , HOH A:1245 , PO4 B:151 , PO4 B:1152 , PO4 E:151 , HOH E:296BINDING SITE FOR RESIDUE K A 1183
30DC3SOFTWAREPO4 B:1152 , HOH B:1245 , PO4 C:151 , PO4 C:1151 , HOH C:1235 , PO4 D:151BINDING SITE FOR RESIDUE K B 1184
31MLUNKNOWNALA A:23 , GLN A:24 , ALA A:25 , GLY A:26 , ASP A:27 , GLU A:28 , GLU A:29 , VAL A:30 , THR A:31 , GLU A:32 , SER A:33 , GLY A:34 , LEU A:35 , ILE A:36 , ILE A:37 , GLY A:38 , ARG A:40 , VAL A:41 , GLN A:42 , GLU A:44THE MOBILE LOOP (SEE REFERENCE 1) MEDIATES BINDING TO GROEL IN THE CHAPERONIN COMPLEX.

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1G31)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1G31)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1G31)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1G31)

(-) Exons   (0, 0)

(no "Exon" information available for 1G31)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:107
 aligned with VG31_BPT4 | P17313 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:107
                                    14        24        34        44        54        64        74        84        94       104       
            VG31_BPT4     5 QQLPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPEGFCEVGDLTSLPVGQIRNVPHPFVALGLKQPKEIKQKFVTCHYKAIPCLYK 111
               SCOP domains d1g31a_ A: GP31 co-chaperonin                                                                               SCOP domains
               CATH domains 1g31A00 A:5-111 10 Kd Chaperonin, Protein Cpn10; Chain O                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee....hhh...........hhhhhh.eeeeeeeee.............eeeeehhh.eee..hhhh.....hhh....eeeeehhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1g31 A   5 QQLPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPEGFCEVGDLTSLPVGQIRNVPHPFVALGLKQPKEIKQKFVTCHYKAIPCLYK 111
                                    14        24        34        44        54        64        74        84        94       104       


Chain B from PDB  Type:PROTEIN  Length:107
 aligned with VG31_BPT4 | P17313 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:107
                                    14        24        34        44        54        64        74        84        94       104       
            VG31_BPT4     5 QQLPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPEGFCEVGDLTSLPVGQIRNVPHPFVALGLKQPKEIKQKFVTCHYKAIPCLYK 111
               SCOP domains d1g31b_ B: GP31 co-chaperonin                                                                               SCOP domains
               CATH domains 1g31B00 B:5-111 10 Kd Chaperonin, Protein Cpn10; Chain O                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee..................hhhhhh.eeeeeeeee.............eeeeehhh.eee..hhhh.....hhh....eeeeehhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1g31 B   5 QQLPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPEGFCEVGDLTSLPVGQIRNVPHPFVALGLKQPKEIKQKFVTCHYKAIPCLYK 111
                                    14        24        34        44        54        64        74        84        94       104       


Chain C from PDB  Type:PROTEIN  Length:107
 aligned with VG31_BPT4 | P17313 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:107
                                    14        24        34        44        54        64        74        84        94       104       
            VG31_BPT4     5 QQLPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPEGFCEVGDLTSLPVGQIRNVPHPFVALGLKQPKEIKQKFVTCHYKAIPCLYK 111
               SCOP domains d1g31c_ C: GP31 co-chaperonin                                                                               SCOP domains
               CATH domains 1g31C00 C:5-111 10 Kd Chaperonin, Protein Cpn10; Chain O                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee....hhh...........hhhhhh.eeeeeeeee.............eeeeehhh.eee..hhhh.....hhh....eeeeehhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1g31 C   5 QQLPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPEGFCEVGDLTSLPVGQIRNVPHPFVALGLKQPKEIKQKFVTCHYKAIPCLYK 111
                                    14        24        34        44        54        64        74        84        94       104       


Chain D from PDB  Type:PROTEIN  Length:107
 aligned with VG31_BPT4 | P17313 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:107
                                    14        24        34        44        54        64        74        84        94       104       
            VG31_BPT4     5 QQLPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPEGFCEVGDLTSLPVGQIRNVPHPFVALGLKQPKEIKQKFVTCHYKAIPCLYK 111
               SCOP domains d1g31d_ D: GP31 co-chaperonin                                                                               SCOP domains
               CATH domains 1g31D00 D:5-111 10 Kd Chaperonin, Protein Cpn10; Chain O                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee....hhh...........hhhhhh.eeeeeeeee.............eeeeehhh.eee..hhhh.....hhh....eeeeehhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1g31 D   5 QQLPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPEGFCEVGDLTSLPVGQIRNVPHPFVALGLKQPKEIKQKFVTCHYKAIPCLYK 111
                                    14        24        34        44        54        64        74        84        94       104       


Chain E from PDB  Type:PROTEIN  Length:107
 aligned with VG31_BPT4 | P17313 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:107
                                    14        24        34        44        54        64        74        84        94       104       
            VG31_BPT4     5 QQLPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPEGFCEVGDLTSLPVGQIRNVPHPFVALGLKQPKEIKQKFVTCHYKAIPCLYK 111
               SCOP domains d1g31e_ E: GP31 co-chaperonin                                                                               SCOP domains
               CATH domains 1g31E00 E:5-111 10 Kd Chaperonin, Protein Cpn10; Chain O                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee..................hhhhhh.eeeeeeeee.............eeeeehhh.eee..hhhh.....hhh....eeeeehhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1g31 E   5 QQLPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPEGFCEVGDLTSLPVGQIRNVPHPFVALGLKQPKEIKQKFVTCHYKAIPCLYK 111
                                    14        24        34        44        54        64        74        84        94       104       


Chain F from PDB  Type:PROTEIN  Length:107
 aligned with VG31_BPT4 | P17313 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:107
                                    14        24        34        44        54        64        74        84        94       104       
            VG31_BPT4     5 QQLPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPEGFCEVGDLTSLPVGQIRNVPHPFVALGLKQPKEIKQKFVTCHYKAIPCLYK 111
               SCOP domains d1g31f_ F: GP31 co-chaperonin                                                                               SCOP domains
               CATH domains 1g31F00 F:5-111 10 Kd Chaperonin, Protein Cpn10; Chain O                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee....hhh...........hhhhhh.eeeeeeeee.............eeeeehhh.eee..hhhh.....hhh....eeeeehhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1g31 F   5 QQLPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPEGFCEVGDLTSLPVGQIRNVPHPFVALGLKQPKEIKQKFVTCHYKAIPCLYK 111
                                    14        24        34        44        54        64        74        84        94       104       


Chain G from PDB  Type:PROTEIN  Length:107
 aligned with VG31_BPT4 | P17313 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:107
                                    14        24        34        44        54        64        74        84        94       104       
            VG31_BPT4     5 QQLPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPEGFCEVGDLTSLPVGQIRNVPHPFVALGLKQPKEIKQKFVTCHYKAIPCLYK 111
               SCOP domains d1g31g_ G: GP31 co-chaperonin                                                                               SCOP domains
               CATH domains 1g31G00 G:5-111 10 Kd Chaperonin, Protein Cpn10; Chain O                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee..................hhhhhh.eeeeeeeee.............eeeeehhh.eee..hhhh.....hhh....eeeeehhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1g31 G   5 QQLPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPEGFCEVGDLTSLPVGQIRNVPHPFVALGLKQPKEIKQKFVTCHYKAIPCLYK 111
                                    14        24        34        44        54        64        74        84        94       104
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 7)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 7)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1G31)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G   (VG31_BPT4 | P17313)
biological process
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0019069    viral capsid assembly    The assembly of a virus capsid from its protein subunits.
    GO:0019076    viral release from host cell    The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.

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  1g31
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  VG31_BPT4 | P17313
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