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(-) Description

Title :  HUMAN RESPIRATORY SYNCYTIAL VIRUS FUSION PROTEIN CORE
 
Authors :  X. Zhao, M. Singh, V. N. Malashkevich, P. S. Kim
Date :  18 Oct 00  (Deposition) - 03 Jan 01  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  G,H,I,J,K,L  (1x)
Biol. Unit 3:  M,N,O,P,Q,R  (1x)
Biol. Unit 4:  S,T,U,V,W,X  (1x)
Keywords :  Membrane Fusion, Pneumovirus, Hrsv, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Zhao, M. Singh, V. N. Malashkevich, P. S. Kim
Structural Characterization Of The Human Respiratory Syncytial Virus Fusion Protein Core.
Proc. Natl. Acad. Sci. Usa V. 97 14172 2000
PubMed-ID: 11106388  |  Reference-DOI: 10.1073/PNAS.260499197

(-) Compounds

Molecule 1 - FUSION PROTEIN (F)
    Chains: A, C, E, G, I, K, M, O, Q, S, U, W
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE9
    Expression System Strain: XL1-BLUE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 153-209, HRSV F1 HEPTAD REPEAT
    Gene: HRSV F
    Organism Scientific: HUMAN RESPIRATORY SYNCYTIAL VIRUS
    Organism Taxid: 11261
    Other Details: FIRST HEPTAD REPEAT
    Strain: RSS-2
    Synonym: CELL FUSION GLYCOPROTEIN
 
Molecule 2 - FUSION PROTEIN (F)
    Chains: B, D, F, H, J, L, N, P, R, T, V, X
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE9
    Expression System Strain: XL1-BLUE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 476-520, HRSV F1 HEPTAD REPEAT
    Gene: HRSV F
    Organism Scientific: HUMAN RESPIRATORY SYNCYTIAL VIRUS
    Organism Taxid: 11261
    Other Details: SECOND HEPTAD REPEAT
    Strain: RSS-2
    Synonym: CELL FUSION GLYCOPROTEIN

 Structural Features

(-) Chains, Units

  123456789101112131415161718192021222324
Asymmetric Unit : ABCDEFGHIJKLMNOPQRSTUVWX
Biological Unit 1 (1x): ABCDEF                  
Biological Unit 2 (1x):       GHIJKL            
Biological Unit 3 (1x):             MNOPQR      
Biological Unit 4 (1x):                   STUVWX

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1G2C)

(-) Sites  (0, 0)

(no "Site" information available for 1G2C)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1G2C)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1G2C)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1G2C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1G2C)

(-) Exons   (0, 0)

(no "Exon" information available for 1G2C)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:50
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:50
                                   169       179       189       199       209
            FUS_HRSVR   160 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNK 209
               SCOP domains d1g2c.1 A:,B: HRSV fusion protein core             SCOP domains
               CATH domains 1g2cA00 A:160-209                                  CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 1g2c A 160 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNK 209
                                   169       179       189       199       209


Chain B from PDB  Type:PROTEIN  Length:40
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:40
                                   489       499       509       519
            FUS_HRSVR   480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNVNAG 519
               SCOP domains d1g2c.1 A:,B: HRSV fusion protein core   SCOP domains
               CATH domains 1g2cB00 B:480-519                        CATH domains
               Pfam domains ---------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------- PROSITE
                 Transcript ---------------------------------------- Transcript
                 1g2c B 480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNVNAG 519
                                   489       499       509       519


Chain C from PDB  Type:PROTEIN  Length:48
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:48
                                   169       179       189       199        
            FUS_HRSVR   160 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIV 207
               SCOP domains d1g2c.2 C:,D: HRSV fusion protein core           SCOP domains
               CATH domains 1g2cC00 C:160-207                                CATH domains
               Pfam domains ------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------ Transcript
                 1g2c C 160 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIV 207
                                   169       179       189       199        


Chain D from PDB  Type:PROTEIN  Length:36
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:36
                                   489       499       509      
            FUS_HRSVR   480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHN 515
               SCOP domains d1g2c.2 C:,D:                        SCOP domains
               CATH domains 1g2cD00 D:480-515                    CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                 1g2c D 480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHN 515
                                   489       499       509      


Chain E from PDB  Type:PROTEIN  Length:48
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:48
                                   169       179       189       199        
            FUS_HRSVR   160 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIV 207
               SCOP domains d1g2c.3 E:,F: HRSV fusion protein core           SCOP domains
               CATH domains 1g2cE00 E:160-207                                CATH domains
               Pfam domains ------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------ Transcript
                 1g2c E 160 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIV 207
                                   169       179       189       199        


Chain F from PDB  Type:PROTEIN  Length:36
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:36
                                   489       499       509      
            FUS_HRSVR   480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHN 515
               SCOP domains d1g2c.3 E:,F:                        SCOP domains
               CATH domains 1g2cF00 F:480-515                    CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                 1g2c F 480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHN 515
                                   489       499       509      


Chain G from PDB  Type:PROTEIN  Length:49
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:49
                                   169       179       189       199         
            FUS_HRSVR   160 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVN 208
               SCOP domains d1g2c.4 G:,H: HRSV fusion protein core            SCOP domains
               CATH domains 1g2cG00 G:160-208                                 CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 1g2c G 160 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVN 208
                                   169       179       189       199         


Chain H from PDB  Type:PROTEIN  Length:37
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:37
                                   489       499       509       
            FUS_HRSVR   480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNV 516
               SCOP domains d1g2c.4 G:,H:                         SCOP domains
               CATH domains 1g2cH00 H:480-516                     CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                 1g2c H 480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNV 516
                                   489       499       509       


Chain I from PDB  Type:PROTEIN  Length:50
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:50
                                   168       178       188       198       208
            FUS_HRSVR   159 HLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVN 208
               SCOP domains d1g2c.5 I:,J: HRSV fusion protein core             SCOP domains
               CATH domains 1g2cI00 I:159-208                                  CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 1g2c I 159 HLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVN 208
                                   168       178       188       198       208


Chain J from PDB  Type:PROTEIN  Length:36
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:36
                                   489       499       509      
            FUS_HRSVR   480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHN 515
               SCOP domains d1g2c.5 I:,J:                        SCOP domains
               CATH domains 1g2cJ00 J:480-515                    CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                 1g2c J 480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHN 515
                                   489       499       509      


Chain K from PDB  Type:PROTEIN  Length:48
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:48
                                   171       181       191       201        
            FUS_HRSVR   162 GEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNK 209
               SCOP domains d1g2c.6 K:,L: HRSV fusion protein core           SCOP domains
               CATH domains 1g2cK00 K:162-209                                CATH domains
               Pfam domains ------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------ Transcript
                 1g2c K 162 GEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNK 209
                                   171       181       191       201        


Chain L from PDB  Type:PROTEIN  Length:40
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:40
                                   486       496       506       516
            FUS_HRSVR   477 FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNV 516
               SCOP domains d1g2c.6 K:,L: HRSV fusion protein core   SCOP domains
               CATH domains 1g2cL00 L:477-516                        CATH domains
               Pfam domains ---------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------- PROSITE
                 Transcript ---------------------------------------- Transcript
                 1g2c L 477 FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNV 516
                                   486       496       506       516


Chain M from PDB  Type:PROTEIN  Length:47
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:47
                                   169       179       189       199       
            FUS_HRSVR   160 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPI 206
               SCOP domains d1g2c.7 M:,N: HRSV fusion protein core          SCOP domains
               CATH domains 1g2cM00 M:160-206                               CATH domains
               Pfam domains ----------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------- PROSITE
                 Transcript ----------------------------------------------- Transcript
                 1g2c M 160 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPI 206
                                   169       179       189       199       


Chain N from PDB  Type:PROTEIN  Length:37
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:37
                                   489       499       509       
            FUS_HRSVR   480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNV 516
               SCOP domains d1g2c.7 M:,N:                         SCOP domains
               CATH domains 1g2cN00 N:480-516                     CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                 1g2c N 480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNV 516
                                   489       499       509       


Chain O from PDB  Type:PROTEIN  Length:50
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:50
                                   167       177       187       197       207
            FUS_HRSVR   158 LHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIV 207
               SCOP domains d1g2c.8 O:,P: HRSV fusion protein core             SCOP domains
               CATH domains 1g2cO00 O:158-207                                  CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 1g2c O 158 LHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIV 207
                                   167       177       187       197       207


Chain P from PDB  Type:PROTEIN  Length:37
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:37
                                   489       499       509       
            FUS_HRSVR   480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNV 516
               SCOP domains d1g2c.8 O:,P:                         SCOP domains
               CATH domains 1g2cP00 P:480-516                     CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                 1g2c P 480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNV 516
                                   489       499       509       


Chain Q from PDB  Type:PROTEIN  Length:49
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:49
                                   169       179       189       199         
            FUS_HRSVR   160 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVN 208
               SCOP domains d1g2c.9 Q:,R: HRSV fusion protein core            SCOP domains
               CATH domains 1g2cQ00 Q:160-208                                 CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 1g2c Q 160 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVN 208
                                   169       179       189       199         


Chain R from PDB  Type:PROTEIN  Length:37
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:37
                                   489       499       509       
            FUS_HRSVR   480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNV 516
               SCOP domains d1g2c.9 Q:,R:                         SCOP domains
               CATH domains 1g2cR00 R:480-516                     CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                 1g2c R 480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNV 516
                                   489       499       509       


Chain S from PDB  Type:PROTEIN  Length:50
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:50
                                   168       178       188       198       208
            FUS_HRSVR   159 HLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVN 208
               SCOP domains d1g2c.a S:,T: HRSV fusion protein core             SCOP domains
               CATH domains 1g2cS00 S:159-208                                  CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 1g2c S 159 HLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVN 208
                                   168       178       188       198       208


Chain T from PDB  Type:PROTEIN  Length:38
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:38
                                   489       499       509        
            FUS_HRSVR   480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNVN 517
               SCOP domains d1g2c.a S:,T: HRSV fusion protein core SCOP domains
               CATH domains 1g2cT00 T:480-517                      CATH domains
               Pfam domains -------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------- PROSITE
                 Transcript -------------------------------------- Transcript
                 1g2c T 480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNVN 517
                                   489       499       509        


Chain U from PDB  Type:PROTEIN  Length:50
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:50
                                   169       179       189       199       209
            FUS_HRSVR   160 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNK 209
               SCOP domains d1g2c.b U:,V: HRSV fusion protein core             SCOP domains
               CATH domains 1g2cU00 U:160-209                                  CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 1g2c U 160 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNK 209
                                   169       179       189       199       209


Chain V from PDB  Type:PROTEIN  Length:38
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:38
                                   489       499       509        
            FUS_HRSVR   480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNVN 517
               SCOP domains d1g2c.b U:,V: HRSV fusion protein core SCOP domains
               CATH domains 1g2cV00 V:480-517                      CATH domains
               Pfam domains -------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------- PROSITE
                 Transcript -------------------------------------- Transcript
                 1g2c V 480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNVN 517
                                   489       499       509        


Chain W from PDB  Type:PROTEIN  Length:50
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:50
                                   169       179       189       199       209
            FUS_HRSVR   160 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNK 209
               SCOP domains d1g2c.c W:,X: HRSV fusion protein core             SCOP domains
               CATH domains 1g2cW00 W:160-209                                  CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 1g2c W 160 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNK 209
                                   169       179       189       199       209


Chain X from PDB  Type:PROTEIN  Length:38
 aligned with FUS_HRSVR | P11209 from UniProtKB/Swiss-Prot  Length:574

    Alignment length:38
                                   489       499       509        
            FUS_HRSVR   480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNVN 517
               SCOP domains d1g2c.c W:,X: HRSV fusion protein core SCOP domains
               CATH domains 1g2cX00 X:480-517                      CATH domains
               Pfam domains -------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------- PROSITE
                 Transcript -------------------------------------- Transcript
                 1g2c X 480 PLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNVN 517
                                   489       499       509
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
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 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Coiled coil proteins (689)

(-) CATH Domains  (2, 24)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1G2C)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X   (FUS_HRSVR | P11209)
biological process
    GO:0019064    fusion of virus membrane with host plasma membrane    Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
    GO:0006948    induction by virus of host cell-cell fusion    The process of syncytia-forming cell-cell fusion, caused by a virus.
    GO:0039663    membrane fusion involved in viral entry into host cell    Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
    GO:0060141    positive regulation of syncytium formation by virus    The process in which a virus increases the frequency, rate or extent of the formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
cellular component
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

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  1g2c
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  FUS_HRSVR | P11209
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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