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(-) Description

Title :  CRYSTAL STRUCTURE OF BOVINE RETINAL CREATINE KINASE
 
Authors :  D. Tisi, B. Bax, A. Loew
Date :  09 Oct 00  (Deposition) - 07 Feb 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Brain-Type Creatine Kinase, Guanidino Kinase Cellular Energy Metabolism, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. Tisi, B. Bax, A. Loew
The Three-Dimensional Structure Of Cytosolic Bovine Retinal Creatine Kinase.
Acta Crystallogr. , Sect. D V. 57 187 2001
PubMed-ID: 11173463  |  Reference-DOI: 10.1107/S0907444900015614
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CREATINE KINASE
    ChainsA
    EC Number2.7.3.2
    OrganRETINA
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:130 , ARG A:132 , ARG A:292BINDING SITE FOR RESIDUE SO4 A 382
2AC2SOFTWAREARG A:132 , ASN A:286 , ARG A:320 , ARG A:341BINDING SITE FOR RESIDUE SO4 A 383

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1G0W)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Trp A:211 -Pro A:212

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

Asymmetric/Biological Unit (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_KCRM_BOVIN_001 *I377MKCRM_BOVIN  ---  ---AM377M
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (3, 3)

Asymmetric/Biological Unit (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHOSPHAGEN_KINASE_NPS51509 Phosphagen kinase N-terminal domain profile.KCRM_BOVIN11-98  1A:11-98
2PHOSPHAGEN_KINASE_CPS51510 Phosphagen kinase C-terminal domain profile.KCRM_BOVIN125-367  1A:125-367
3PHOSPHAGEN_KINASEPS00112 Phosphagen kinase active site signature.KCRM_BOVIN283-289  1A:283-289

(-) Exons   (7, 7)

Asymmetric/Biological Unit (7, 7)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000184921ENSBTAE00000258266chr18:52747755-5274770254KCRM_BOVIN-00--
1.2ENSBTAT000000184922ENSBTAE00000150503chr18:52745419-52745206214KCRM_BOVIN1-65651A:2-6564
1.3ENSBTAT000000184923ENSBTAE00000391896chr18:52744172-52744018155KCRM_BOVIN65-116521A:65-11652
1.4ENSBTAT000000184924ENSBTAE00000150543chr18:52743678-52743546133KCRM_BOVIN117-161451A:117-16145
1.5ENSBTAT000000184925ENSBTAE00000150548chr18:52741525-52741354172KCRM_BOVIN161-218581A:161-21858
1.6ENSBTAT000000184926ENSBTAE00000150555chr18:52740103-52739980124KCRM_BOVIN218-259421A:218-25942
1.7ENSBTAT000000184927ENSBTAE00000258262chr18:52739563-52739374190KCRM_BOVIN260-323641A:260-32162
1.8ENSBTAT000000184928ENSBTAE00000150564chr18:52738870-52738345526KCRM_BOVIN323-381591A:330-38152

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:372
 aligned with KCRM_BOVIN | Q9XSC6 from UniProtKB/Swiss-Prot  Length:381

    Alignment length:380
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381
           KCRM_BOVIN     2 PFGNTHNKHKLNFKAEEEYPDLSKHNNHMAKALTLEIYKKLRDKETPSGFTLDDVIQTGVDNPGHPFIMTVGCVAGDEESYTVFKDLFDPIIQDRHGGFKPTDKHKTDLNHENLKGGDDLDPNYVLSSRVRTGRSIKGYALPPHCSRGERRAVEKLSVEALNSLTGEFKGKYYPLKSMTEQEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKSFLVWVNEEDHLRVISMEKGGNMKEVFRRFCVGLQKIEEIFKKAGHPFMWNEHLGYVLTCPSNLGTGLRGGVHVKLAHLSKHPKFEEILTRLRLQKRGTGGVDTAAVGSVFDVSNADRLGSSEVEQVQLVVDGVKLMVEMEKKLEKGQSIDDMIPAQK 381
               SCOP domains d1g0wa1 A:2-102 Creatine kinase, N-domain                                                            d1g0wa2 A:103-381 Creatine kinase, C-terminal domain                                                                                                                                                                                                                                    SCOP domains
               CATH domains ----1g0wA01 A:6-102 Transferase Creatine Kinase, Chain A, domain 1                                   --1g0wA02 A:105-380 Creatine Kinase; Chain                                                                                                                                                                                                                                            - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhh..hhhhhh.......hhhhhhhhhhhhhhhh........hhhhhhhhhhhh................hhhhhhhhhhhhhhhhhh.............hhhhh..........eeeeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhhhhh.......hhhhhh...........eeeee....eeeee.....eeeeeeee..hhhhhhhhhhhhhhhhhhhhhhh.....ee...ee...hhhhh....eeeeeee........hhhhhhhhhheeee.--------...eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M---- SAPs(SNPs)
                PROSITE (1) ---------PHOSPHAGEN_KINASE_N  PDB: A:11-98 UniProt: 11-98                                        --------------------------PHOSPHAGEN_KINASE_C  PDB: A:125-367 UniProt: 125-367                                                                                                                                                                                               -------------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PHOSPHA-------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.2  PDB: A:2-65 UniProt: 1-65 [INCOMPLETE]                ---------------------------------------------------Exon 1.4  PDB: A:117-161 UniProt: 117-161    --------------------------------------------------------Exon 1.6  PDB: A:218-259 UniProt: 218-259 Exon 1.7  PDB: A:260-321 UniProt: 260-323 [INCOMPLETE]          ---------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------Exon 1.3  PDB: A:65-116 UniProt: 65-116             --------------------------------------------Exon 1.5  PDB: A:161-218 UniProt: 161-218                 --------------------------------------------------------------------------------------------------------Exon 1.8  PDB: A:330-381 UniProt: 323-381 [INCOMPLETE]      Transcript 1 (2)
                 1g0w A   2 PFSNSHNTLKLRFPAEDEFPDLSGHNNHMAKVLTPELYAELRAKSTPSGFTVDDVIQTGVDNPGHPYIMTVGCVAGDEESYDVFKELFDPIIEDRHGGYKPTDEHKTDLNPDNLQGGDDLDPNYVLSSRVRTGRSIRGFCLPPHCSRGERRAIEKLAVEALSSLDGDLAGRYYALKSMTEAEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKTFLVWINEEDHLRVISMQKGGNMKEVFTRFCNGLTQIETLFKSKNYEFMWNPHLGYILTCPSNLGTGLRAGVHIKLPHLGKHEKFSEVLKRLRLQKRG--------VGGVFDVSNADRLGFSEVELVQMVVDGVKLLIEMEQRLEQGQAIDDLMPAQK 381
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381
                                                                                                                                                                                                                                                                                                                                                         321      330                                                   

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1G0W)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (KCRM_BOVIN | Q9XSC6)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0004111    creatine kinase activity    Catalysis of the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+).
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016772    transferase activity, transferring phosphorus-containing groups    Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
biological process
    GO:0046314    phosphocreatine biosynthetic process    The chemical reactions and pathways resulting in the formation of phosphocreatine, a phosphagen of creatine which is synthesized and broken down by creatine phosphokinase.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0009408    response to heat    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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