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Asym./Biol. Unit (Jmol Viewer)

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Title :   STRUCTURE OF TRIHYDROXYNAPHTHALENE REDUCTASE IN COMPLEX WITH NADPH AND PYROQUILON

Authors :   D. Liao, G. S. Basarab, A. A. Gatenby, B. Valent, D. B. Jordan

Date :   06 Oct 00 (Deposition) - 06 Jun 01 (Release) - 27 Feb 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Protein-Nadph-Active Site Inhibitor Complex, Dinucleotide Binding Fold, Oxidoreductase, Short Chain Dehydrogenase, Oxidoreductase- Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Liao, G. S. Basarab, A. A. Gatenby, B. Valent, D. B. Jordan
Structures Of Trihydroxynaphthalene Reductase-Fungicide Complexes: Implications For Structure-Based Design And Catalysis.
Structure V. 9 19 2001
PubMed-ID: 11342131 | Reference-DOI: 10.1016/S0969-2126(00)00548-7

Molecule 1 - TRIHYDROXYNAPHTHALENE REDUCTASE
	Chains	:	A, B, C, D
	EC Number	:	1.1.1.252
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PTHNR2
	Expression System Taxid	:	562
	Mutation	:	YES
	Organism Scientific	:	MAGNAPORTHE GRISEA
	Organism Taxid	:	148305

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 8)

No.	Name	Count	Type	Full Name
1	NDP	4	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
2	PYQ	4	Ligand/Ion	PYROQUILON

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:36 , ARG A:39 , GLY A:40 , ILE A:41 , ALA A:61 , ASN A:62 , SER A:63 , ALA A:86 , ASN A:87 , VAL A:88 , ASN A:114 , SER A:115 , GLY A:116 , MET A:162 , GLY A:163 , SER A:164 , TYR A:178 , LYS A:182 , PRO A:208 , GLY A:209 , GLY A:210 , ILE A:211 , THR A:213 , ASP A:214 , MET A:215 , PYQ A:1404 , HOH A:1479 , HOH A:1491 , HOH A:1492 , HOH A:1493 , HOH A:1523 , HOH A:1636	BINDING SITE FOR RESIDUE NDP A 1400
2	AC2	SOFTWARE	GLY B:36 , ARG B:39 , GLY B:40 , ILE B:41 , ALA B:61 , ASN B:62 , SER B:63 , ALA B:86 , ASN B:87 , VAL B:88 , ASN B:114 , SER B:115 , GLY B:116 , MET B:162 , GLY B:163 , SER B:164 , TYR B:178 , LYS B:182 , PRO B:208 , GLY B:209 , GLY B:210 , ILE B:211 , THR B:213 , ASP B:214 , MET B:215 , PYQ B:1405 , HOH B:1453 , HOH B:1454 , HOH B:1456 , HOH B:1457 , HOH B:1465 , HOH B:1466 , HOH B:1467	BINDING SITE FOR RESIDUE NDP B 1401
3	AC3	SOFTWARE	THR C:5 , GLN C:6 , GLY C:36 , ARG C:39 , GLY C:40 , ILE C:41 , ALA C:61 , ASN C:62 , SER C:63 , ALA C:86 , ASN C:87 , VAL C:88 , ASN C:114 , SER C:115 , GLY C:116 , MET C:162 , GLY C:163 , SER C:164 , TYR C:178 , LYS C:182 , PRO C:208 , GLY C:209 , GLY C:210 , ILE C:211 , THR C:213 , ASP C:214 , MET C:215 , PYQ C:1406 , HOH C:1414 , HOH C:1416 , HOH C:1423 , HOH C:1544	BINDING SITE FOR RESIDUE NDP C 1402
4	AC4	SOFTWARE	THR D:5 , GLN D:6 , GLY D:36 , ARG D:39 , GLY D:40 , ILE D:41 , ALA D:61 , ASN D:62 , SER D:63 , ALA D:86 , ASN D:87 , VAL D:88 , ASN D:114 , SER D:115 , GLY D:116 , MET D:162 , GLY D:163 , SER D:164 , TYR D:178 , LYS D:182 , PRO D:208 , GLY D:209 , GLY D:210 , ILE D:211 , THR D:213 , ASP D:214 , MET D:215 , PYQ D:1407 , HOH D:1497 , HOH D:1498 , HOH D:1534 , HOH D:1535 , HOH D:1647 , HOH D:1653	BINDING SITE FOR RESIDUE NDP D 1403
5	AC5	SOFTWARE	SER A:164 , ILE A:165 , TYR A:178 , GLY A:210 , TYR A:223 , NDP A:1400	BINDING SITE FOR RESIDUE PYQ A 1404
6	AC6	SOFTWARE	SER B:164 , ILE B:165 , TYR B:178 , GLY B:210 , TYR B:223 , NDP B:1401	BINDING SITE FOR RESIDUE PYQ B 1405
7	AC7	SOFTWARE	SER C:164 , ILE C:165 , THR C:166 , TYR C:178 , GLY C:210 , TYR C:223 , NDP C:1402	BINDING SITE FOR RESIDUE PYQ C 1406
8	AC8	SOFTWARE	SER D:164 , ILE D:165 , TYR D:178 , GLY D:210 , TYR D:223 , NDP D:1403	BINDING SITE FOR RESIDUE PYQ D 1407

(no "SS Bond" information available for 1G0O)

(no "Cis Peptide Bond" information available for 1G0O)

(no "SAP(SNP)/Variant" information available for 1G0O)

Asymmetric/Biological Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_SHORT	PS00061	Short-chain dehydrogenases/reductases family signature.	T4HR_MAGO7	165-193	4	A:165-193 B:165-193 C:165-193 D:165-193

(no "Exon" information available for 1G0O)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:272
 aligned with T4HR_MAGO7 | Q12634 from UniProtKB/Swiss-Prot  Length:283

    Alignment length:272
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281  
           T4HR_MAGO7    12 KYDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAASAWSPLHRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGACM 283
               SCOP domains d1g0oa_ A: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)                                                                                                                                                                                                        SCOP domains
               CATH domains 1g0oA00 A:12-283 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh....eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....hhhhhhhhhhhh......hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: A:165-193    ------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g0o A  12 KYDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGACM 283
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281

Chain B from PDB  Type:PROTEIN  Length:272
 aligned with T4HR_MAGO7 | Q12634 from UniProtKB/Swiss-Prot  Length:283

    Alignment length:272
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281  
           T4HR_MAGO7    12 KYDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAASAWSPLHRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGACM 283
               SCOP domains d1g0ob_ B: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)                                                                                                                                                                                                        SCOP domains
               CATH domains 1g0oB00 B:12-283 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh....eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....hhhhhhhhhhhh......hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: B:165-193    ------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g0o B  12 KYDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGACM 283
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281

Chain C from PDB  Type:PROTEIN  Length:281
 aligned with T4HR_MAGO7 | Q12634 from UniProtKB/Swiss-Prot  Length:283

    Alignment length:281
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282 
           T4HR_MAGO7     3 AVTQPRGESKYDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAASAWSPLHRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGACM 283
               SCOP domains d1g0oc_ C: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)                                                                                                                                                                                                                 SCOP domains
               CATH domains 1g0oC00 C:3-283 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh.....hhhhhh....eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....hhhhhhhhhhhh......hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: C:165-193    ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g0o C   3 AVTQPRGESKYDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGACM 283
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282

Chain D from PDB  Type:PROTEIN  Length:281
 aligned with T4HR_MAGO7 | Q12634 from UniProtKB/Swiss-Prot  Length:283

    Alignment length:281
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282 
           T4HR_MAGO7     3 AVTQPRGESKYDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAASAWSPLHRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGACM 283
               SCOP domains d1g0od_ D: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)                                                                                                                                                                                                                 SCOP domains
               CATH domains 1g0oD00 D:3-283 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh.....hhhhhh....eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....hhhhhhhhhhhh......hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: D:165-193    ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g0o D   3 AVTQPRGESKYDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGACM 283
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: Tyrosine-dependent oxidoreductases (503)

Protein domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) (4)

Fungus (Magnaporthe grisea) [TaxId: 148305] (4)

1a	d1g0oa_	A:
1b	d1g0ob_	B:
1c	d1g0oc_	C:
1d	d1g0od_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Magnaporthe grisea. Organism_taxid: 148305. (4)

1a	1g0oA00	A:12-283
1b	1g0oB00	B:12-283
1c	1g0oC00	C:3-283
1d	1g0oD00	D:3-283

(no "Pfam Domain" information available for 1G0O)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (T4HR_MAGO7 | Q12634)

molecular function
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0047039	tetrahydroxynaphthalene reductase activity	Catalysis of the reaction: NADP+ + scytalone = NADPH + H+ + 1,3,6,8-naphthalenetetrol.
biological process
	GO:0042438	melanin biosynthetic process	The chemical reactions and pathways resulting in the formation of melanins, pigments largely of animal origin. High molecular weight polymers of indole quinone, they are irregular polymeric structures and are divided into three groups: allomelanins in the plant kingdom and eumelanins and phaeomelanins in the animal kingdom.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005575	cellular_component	The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1g0o)

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	1g0o
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	1.1.1.252
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UniProtKB/Swiss-Prot
	T4HR_MAGO7 \| Q12634	:	1doh 1g0n 1ybv

1doh	SAME ENZYME BUT WITH A DIFFERENT INHIBITOR (4-NITRO-INDEN- 1-ONE)
1g0n	SAME ENZYME BUT WITH A DIFFERENT INHIBITOR (4,5,6,7- TETRACHLORO-PHTHALIDE)
1ybv	SAME ENZYME BUT WITH A DIFFERENT INHIBITOR (TRICYCLAZOLE)

Description

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Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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