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(-) Description

Title :  CRYSTAL STRUCTURE OF NITROUS OXIDE REDUCTASE FROM P. DENITRIFICANS
 
Authors :  K. Brown, K. Djinovic-Carugo, T. Haltia, I. Cabrito, M. Saraste, J. J. M I. Moura, M. Tegoni, C. Cambillau
Date :  25 Sep 00  (Deposition) - 25 Sep 01  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Beta-Propeller Domain, Cupredoxin Domain, Cuz Site, Cua Site, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Brown, K. Djinovic-Carugo, T. Haltia, I. Cabrito, M. Saraste, J. J. Moura, I. Moura, M. Tegoni, C. Cambillau
Revisiting The Catalytic Cuz Cluster Of Nitrous Oxide (N2O) Reductase. Evidence Of A Bridging Inorganic Sulfur
J. Biol. Chem. V. 275 41133 2000
PubMed-ID: 11024061  |  Reference-DOI: 10.1074/JBC.M008617200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NITROUS OXIDE REDUCTASE
    Chains: A, B, C, D
    EC Number: 1.7.99.6
    Organism Scientific: PARACOCCUS DENITRIFICANS
    Organism Taxid: 266

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 23)

Asymmetric Unit (4, 23)
No.NameCountTypeFull Name
1CA11Ligand/IonCALCIUM ION
2CL4Ligand/IonCHLORIDE ION
3CUA4Ligand/IonDINUCLEAR COPPER ION
4CUZ4Ligand/Ion(MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3CUA2Ligand/IonDINUCLEAR COPPER ION
4CUZ2Ligand/Ion(MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3CUA2Ligand/IonDINUCLEAR COPPER ION
4CUZ2Ligand/Ion(MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:131 , ASN A:189 , CYS A:272 , ASN A:273 , HIS A:325 , HOH A:5031BINDING SITE FOR RESIDUE CL A 4901
02AC2SOFTWARETYR A:204 , GLU A:207 , MET A:215 , ASP A:221 , ASN A:268 , HOH A:5018BINDING SITE FOR RESIDUE CA A 4903
03AC3SOFTWAREASP A:366 , MET A:424 , HOH A:5504BINDING SITE FOR RESIDUE CA A 4904
04AC4SOFTWARELYS A:397 , GLU A:412 , HOH A:4981 , HOH A:5615 , HOH B:6541 , HOH B:6542BINDING SITE FOR RESIDUE CA A 4905
05AC5SOFTWAREARG B:131 , ASN B:189 , GLY B:271 , CYS B:272 , ASN B:273 , HIS B:325 , HOH B:5847BINDING SITE FOR RESIDUE CL B 4906
06AC6SOFTWARETYR B:204 , GLU B:207 , MET B:215 , ASP B:221 , ASN B:268 , HOH B:6540BINDING SITE FOR RESIDUE CA B 4903
07AC7SOFTWAREHOH B:6494 , HOH B:6536 , HOH B:6537 , HOH B:6538 , HOH B:6539BINDING SITE FOR RESIDUE CA B 4909
08AC8SOFTWAREHOH A:4910 , HOH A:5613 , LYS B:397 , GLU B:412 , HOH B:6534 , HOH B:6535BINDING SITE FOR RESIDUE CA B 4905
09AC9SOFTWAREARG C:131 , ASN C:189 , GLY C:271 , CYS C:272 , ASN C:273 , HIS C:325 , HOH C:6955BINDING SITE FOR RESIDUE CL C 4907
10BC1SOFTWARETYR C:204 , GLU C:207 , MET C:215 , ASP C:221 , ASN C:268 , HOH C:7448BINDING SITE FOR RESIDUE CA C 4903
11BC2SOFTWAREASP C:366 , LEU C:368 , MET C:424BINDING SITE FOR RESIDUE CA C 4910
12BC3SOFTWARELYS C:397 , GLU C:412 , HOH C:7170 , HOH C:7174 , HOH D:8294 , HOH D:8295BINDING SITE FOR RESIDUE CA C 4905
13BC4SOFTWAREARG D:131 , CYS D:272 , ASN D:273 , HIS D:325 , HOH D:7996 , HOH D:8034BINDING SITE FOR RESIDUE CL D 4908
14BC5SOFTWARETYR D:204 , GLU D:207 , MET D:215 , ASP D:221 , ASN D:268BINDING SITE FOR RESIDUE CA D 4903
15BC6SOFTWAREHOH C:6867 , HOH C:6921 , LYS D:397 , GLU D:412 , HOH D:8043 , HOH D:8296BINDING SITE FOR RESIDUE CA D 4904
16BC7SOFTWAREHIS A:526 , CYS A:561 , TRP A:563 , CYS A:565 , HIS A:569 , MET A:572BINDING SITE FOR RESIDUE CUA A 4701
17BC8SOFTWAREHIS A:79 , HIS A:80 , HIS A:128 , HIS A:270 , HIS A:325 , HIS A:376 , HIS A:437 , HOH A:5614BINDING SITE FOR RESIDUE CUZ A 4801
18BC9SOFTWAREHIS B:526 , CYS B:561 , TRP B:563 , CYS B:565 , HIS B:569 , MET B:572BINDING SITE FOR RESIDUE CUA B 4701
19CC1SOFTWAREHIS B:79 , HIS B:80 , HIS B:128 , HIS B:270 , HIS B:325 , HIS B:376 , HIS B:437 , HOH B:6184 , HOH B:6543BINDING SITE FOR RESIDUE CUZ B 5801
20CC2SOFTWAREHIS C:526 , CYS C:561 , TRP C:563 , CYS C:565 , HIS C:569 , MET C:572BINDING SITE FOR RESIDUE CUA C 4701
21CC3SOFTWAREHIS C:79 , HIS C:80 , HIS C:128 , HIS C:270 , HIS C:325 , HIS C:376 , HIS C:437BINDING SITE FOR RESIDUE CUZ C 6801
22CC4SOFTWAREHIS D:526 , CYS D:561 , TRP D:563 , CYS D:565 , HIS D:569 , MET D:572 , HOH D:7995BINDING SITE FOR RESIDUE CUA D 4701
23CC5SOFTWAREHIS D:79 , HIS D:80 , HIS D:128 , HIS D:270 , HIS D:325 , HIS D:376 , HIS D:437 , HOH D:8136BINDING SITE FOR RESIDUE CUZ D 7801

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1FWX)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Ile A:37 -Pro A:38
2Trp A:135 -Pro A:136
3Ala A:495 -Pro A:496
4Ile B:37 -Pro B:38
5Trp B:135 -Pro B:136
6Ala B:495 -Pro B:496
7Ile C:37 -Pro C:38
8Trp C:135 -Pro C:136
9Ala C:495 -Pro C:496
10Ile D:37 -Pro D:38
11Trp D:135 -Pro D:136
12Ala D:495 -Pro D:496

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1FWX)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COX2_CUAPS50857 Cytochrome oxidase subunit II copper A binding domain profile.NOSZ_PARDE551-652
 
 
 		  4A:482-581
B:482-580
C:482-581
D:482-580
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COX2_CUAPS50857 Cytochrome oxidase subunit II copper A binding domain profile.NOSZ_PARDE551-652
 
 
 		  2A:482-581
B:482-580
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COX2_CUAPS50857 Cytochrome oxidase subunit II copper A binding domain profile.NOSZ_PARDE551-652
 
 
 		  2-
-
C:482-581
D:482-580

(-) Exons   (0, 0)

(no "Exon" information available for 1FWX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:591
 aligned with NOSZ_PARDE | Q51705 from UniProtKB/Swiss-Prot  Length:652

    Alignment length:591
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649 
          NOSZ_PARDE     60 GDGSVAPGQLDDYYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTATVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPSILSDIKSVWDRNDPMWAETRAQAEADGVDIDNWTEEVIRDGNKVRVYMSSVAPSFSIESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGVAMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHMEMRGRMLVEPK  650
               SCOP domains d1fwxa2 A:8-451 Nitrous oxide reductase, N-terminal domain                                                                                                                                                                                                                                                                                                                                                                                                                 d1fwxa1 A:452-581 Nitrous oxide reductase, C-terminal domain                                                                         SCOP domains
               CATH domains --1fwxA01 A:10-461 YVTN repeat-like/Quinoprotein amine dehydrogenase                                                                                                                                                                                                                                                                                                                                                                                                                 1fwxA02 A:462-580 Cupredoxins -  blue copper proteins                                                                    - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee...hhh.eeeeee....eeeee.............hhhhhhhhhh..hhhhhhhhhhh............eeeeee..eeeeeeeeeee....eeeeee....eeeeeee......eeeeee.......eeeeee..............hhhhh.eeeeeee....eeeeeeee......eee.....eeeeee.......hhhhhh...eeeeeeeehhhhhhhhhhh..eee..eeeee.hhhhh...eeeeeee.....eee.....eeeee......eeeee..hhhhhhhh..hhhh.eee.......eeeeee....eeeeee....eeeeeehhhhhhhhhh.....eeeeee....eeeeee...........eeeeee...............eeeeeee......eeeeeeee......eeee...............hhhhhhhhhhhhhh..........eeee..eeeeeeeee..ee...eeeee...eeeeeeee........eeeee....eeeee....eeeeeee....eeeeee............eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COX2_CUA  PDB: A:482-581 UniProt: 551-652                                                            PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1fwx A    8 ADGSVAPGQLDDYYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPSILSDIKSVWDRNDPMWAETRAQAEADGVDIDNWTEEVIRDGNKVRVYMSSVAPSFSIESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGVAMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHMEMRGRMLVEPK  581
                                    17        27        37        47        57        67    || 864        73        83        93       103       113       123       133       143       153       840|      172       182       192       202       212       222       232       242   ||  254 ||||  262       272       282       292       302    |||312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472    |||480       490       500       510       520       530       540       550       560       570       580 
                                                                                           72|          873|                                                                                      162||                                                                                246|    256|||                                               307||                                                                                                                                                                     477|||                                                                                                       
                                                                                           860            73                                                                                       840|                                                                                 249     810||                                                850|                                                                                                                                                                      600||                                                                                                       
                                                                                                                                                                                                    163                                                                                          811|                                                 309                                                                                                                                                                       601|                                                                                                       
                                                                                                                                                                                                                                                                                                  257                                                                                                                                                                                                                            478                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:589
 aligned with NOSZ_PARDE | Q51705 from UniProtKB/Swiss-Prot  Length:652

    Alignment length:589
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640         
          NOSZ_PARDE     61 DGSVAPGQLDDYYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTATVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPSILSDIKSVWDRNDPMWAETRAQAEADGVDIDNWTEEVIRDGNKVRVYMSSVAPSFSIESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGVAMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHMEMRGRMLVEP  649
               SCOP domains d1fwxb2 B:9-451 Nitrous oxide reductase, N-terminal domain                                                                                                                                                                                                                                                                                                                                                                                                                d1fwxb1 B:452-580 Nitrous oxide reductase, C-terminal domain                                                                        SCOP domains
               CATH domains -1fwxB01 B:10-461 YVTN repeat-like/Quinoprotein amine dehydrogenase                                                                                                                                                                                                                                                                                                                                                                                                                 1fwxB02 B:462-580 Cupredoxins -  blue copper proteins                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee...hhh.eeeeee....eeeee.............hhhhhhhhhh..hhhhhhhhhhh............eeeeee..eeeeeeeeeee....eeeeee....eeeeeee......eeeeee.......eeeeee..............hhhhh.eeeeeee....eeeeeeee......eee.....eeeeee.......hhhhhh...eeeeeeeehhhhhhhhhh...eee..eeeee.hhhhh...eeeeeee.....eee.....eeeee......eeeee..hhhhhhhh..hhhh.eee.......eeeeee....eeeeee....eeeeeehhhhhhhhh......eeeeee....eeeeee...........eeeeee..hhhhh........eeeeeee......eeeeeeee......eeeehhhhhh.........hhhhhhhhhhhhhh..........eeee..eeeeeeeee..ee...eeeee...eeeeeeee........eeeee....eeeee....eeeeeee....eeeeee............eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COX2_CUA  PDB: B:482-580 UniProt: 551-652                                                           PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1fwx B    9 DGSVAPGQLDDYYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPSILSDIKSVWDRNDPMWAETRAQAEADGVDIDNWTEEVIRDGNKVRVYMSSVAPSFSIESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGVAMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHMEMRGRMLVEP  580
                                    18        28        38        48        58        68   ||  865       |74        84        94       104       114       124       134       144       154       163       173       183       193       203       213       223       233       243  ||   255||||   263       273       283       293       303   ||| 313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473   ||||481       491       501       511       521       531       541       551       561       571         
                                                                                          72|          873|                                                                                      162||                                                                                246|    256|||                                               307||                                                                                                                                                                     477|||                                                                                                      
                                                                                          860            73                                                                                       840|                                                                                 249     810||                                                850|                                                                                                                                                                      600||                                                                                                      
                                                                                                                                                                                                   163                                                                                          811|                                                 309                                                                                                                                                                       601|                                                                                                      
                                                                                                                                                                                                                                                                                                 257                                                                                                                                                                                                                            478                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:590
 aligned with NOSZ_PARDE | Q51705 from UniProtKB/Swiss-Prot  Length:652

    Alignment length:590
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650
          NOSZ_PARDE     61 DGSVAPGQLDDYYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTATVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPSILSDIKSVWDRNDPMWAETRAQAEADGVDIDNWTEEVIRDGNKVRVYMSSVAPSFSIESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGVAMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHMEMRGRMLVEPK  650
               SCOP domains d1fwxc2 C:9-451 Nitrous oxide reductase, N-terminal domain                                                                                                                                                                                                                                                                                                                                                                                                                d1fwxc1 C:452-581 Nitrous oxide reductase, C-terminal domain                                                                         SCOP domains
               CATH domains -1fwxC01 C:10-461 YVTN repeat-like/Quinoprotein amine dehydrogenase                                                                                                                                                                                                                                                                                                                                                                                                                 1fwxC02 C:462-580 Cupredoxins -  blue copper proteins                                                                    - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee...hhh.eeeeee....eeeee.............hhhhhhhhhh..hhhhhhhhhh.............eeeeee..eeeeeeeeeee....eeeeee....eeeeeee......eeeeee.......eeeeee..............hhhhh.eeeeeee....eeeeeeee......eee.....eeeeee.......hhhhhh...eeeeeeeehhhhhhhhhhh..eee..eeeee.hhhhh...eeeeeee.....eee.....eeeee......eeeee..hhhhhhhh..hhhh.eee.......eeeeee....eeeeee....eeeeeehhhhhhhhhh.....eeeeee....eeeeee...........eeeeee..hhhhh........eeeeeee......eeeeeeee......eeeehhhhhh.........hhhhhhhhhhhhhh..........eeee..eeeeeeeee..ee...eeeee...eeeeeeee........eeeee....eeeee....eeeeeee....eeeeee.......hhhh.eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COX2_CUA  PDB: C:482-581 UniProt: 551-652                                                            PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1fwx C    9 DGSVAPGQLDDYYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPSILSDIKSVWDRNDPMWAETRAQAEADGVDIDNWTEEVIRDGNKVRVYMSSVAPSFSIESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGVAMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHMEMRGRMLVEPK  581
                                    18        28        38        48        58        68   ||  865       |74        84        94       104       114       124       134       144       154       163       173       183       193       203       213       223       233       243  ||   255||||   263       273       283       293       303   ||| 313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473   ||||481       491       501       511       521       531       541       551       561       571       581
                                                                                          72|          873|                                                                                      162||                                                                                246|    256|||                                               307||                                                                                                                                                                     477|||                                                                                                       
                                                                                          860            73                                                                                       840|                                                                                 249     810||                                                850|                                                                                                                                                                      600||                                                                                                       
                                                                                                                                                                                                   163                                                                                          811|                                                 309                                                                                                                                                                       601|                                                                                                       
                                                                                                                                                                                                                                                                                                 257                                                                                                                                                                                                                            478                                                                                                       


Chain D from PDB  Type:PROTEIN  Length:588
 aligned with NOSZ_PARDE | Q51705 from UniProtKB/Swiss-Prot  Length:652

    Alignment length:588
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641        
          NOSZ_PARDE     62 GSVAPGQLDDYYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTATVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPSILSDIKSVWDRNDPMWAETRAQAEADGVDIDNWTEEVIRDGNKVRVYMSSVAPSFSIESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGVAMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHMEMRGRMLVEP  649
               SCOP domains d1fwxd2 D:10-451 Nitrous oxide reductase, N-terminal domain                                                                                                                                                                                                                                                                                                                                                                                                              d1fwxd1 D:452-580 Nitrous oxide reductase, C-terminal domain                                                                        SCOP domains
               CATH domains 1fwxD01 D:10-461 YVTN repeat-like/Quinoprotein amine dehydrogenase                                                                                                                                                                                                                                                                                                                                                                                                                 1fwxD02 D:462-580 Cupredoxins -  blue copper proteins                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeeee...hhh.eeeeee...eeeeee.............hhhhhhhhhh..hhhhhhhhhhh............eeeeee..eeeeeeeeeee....eeeeee....eeeeeee......eeeeee.......eeeeee..............hhhhh.eeeeeee....eeeeeeee....eeeee.....eeeeee.......hhhhhh...eeeeeeeehhhhhhhhhhh..eee..eeeee.hhhhh...eeeeeee.....eee.....eeeee......eeeee..hhhhhhhh..hhhh.eee.......eeeeee....eeeeee....eeeeeehhhhhhhhhh.....eeeeee....eeeeee...........eeeeee..hhhhh........eeeeeee......eeeeeeee......eeee...............hhhhhhhhhhhhhh..........eeee..eeeeeeeee..ee...eeeee...eeeeeeee........eeeee....eeeee....eeeeeee....eeeeee............eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COX2_CUA  PDB: D:482-580 UniProt: 551-652                                                           PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1fwx D   10 GSVAPGQLDDYYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPSILSDIKSVWDRNDPMWAETRAQAEADGVDIDNWTEEVIRDGNKVRVYMSSVAPSFSIESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGVAMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHMEMRGRMLVEP  580
                                    19        29        39        49        59        69  ||   866      ||75        85        95       105       115       125       135       145       155      |164       174       184       194       204       214       224       234       244 ||    256|||    264       274       284       294       304  |||  314       324       334       344       354       364       374       384       394       404       414       424       434       444  |    454       464       474  |||| 482       492       502       512       522       532       542       552       562       572        
                                                                                         72|          873|                                                                                      162||                                                                                246|    256|||                                               307||                                                                                                                                      447D                           477|||                                                                                                      
                                                                                         860            73                                                                                       840|                                                                                 249     810||                                                850|                                                                                                                                                                      600||                                                                                                      
                                                                                                                                                                                                  163                                                                                          811|                                                 309                                                                                                                                                                       601|                                                                                                      
                                                                                                                                                                                                                                                                                                257                                                                                                                                                                                                                            478
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1FWX)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (NOSZ_PARDE | Q51705)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0050304    nitrous-oxide reductase activity    Catalysis of the reaction: H(2)O + 2 cytochrome c + nitrogen = 2 reduced cytochrome c + nitrous oxide.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0019333    denitrification pathway    The reduction of nitrate to dinitrogen by four reactions; each intermediate is transformed to the next lower oxidation state; also part of cellular bioenergetics; the nitrogen compounds can serve as terminal acceptors for electron transport phosphorylation in place of oxygen.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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  1fwx
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  1.7.99.6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1FWX)

(-) Related Entries Specified in the PDB File

1qni 1QNI IS NITROUS OXIDE REDUCTASE FROM P. NAUTICA