1FVP - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   FLAVOPROTEIN 390

Authors :   A. Kita, K. Miki

Date :   07 Jul 95 (Deposition) - 15 Oct 95 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym./Biol. Unit : A,B

Keywords :   Flavin-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Kita, S. Kasai, M. Miyata, K. Miki
Structure Of Flavoprotein Fp390 From A Luminescent Bacterium Photobacterium Phosphoreum Refined At 2. 7 A Resolution.
Acta Crystallogr. , Sect. D V. 52 77 1996
PubMed-ID: 15299728 | Reference-DOI: 10.1107/S0907444995009796
(for further references see the PDB file header)

Molecule 1 - FLAVOPROTEIN 390
	Chains	:	A, B
	Engineered	:	YES
	Expression System Vector Type	:	BACTERIUM
	Organism Scientific	:	PHOTOBACTERIUM PHOSPHOREUM
	Organism Taxid	:	659
	Strain	:	IFO 13896
	Synonym	:	FP390

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 4)

No.	Name	Count	Type	Full Name
1	FMA	4	Ligand/Ion	6-(3-TETRADECANOIC ACID) FLAVINE MONONUCLEOTIDE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:60 , LYS A:61 , PHE A:65 , LEU A:72 , SER A:78 , THR A:81 , ILE A:84 , TYR A:88 , HOH A:279 , ASN B:12 , TYR B:14 , MET B:25 , ALA B:28 , ILE B:47	BINDING SITE FOR RESIDUE FMA A 232
2	AC2	SOFTWARE	ASN A:2 , TRP A:4 , TYR A:6 , VAL A:132 , VAL A:134 , VAL A:173 , CYS A:180 , LEU A:181 , VAL A:184 , ALA A:185 , ASN A:193 , GLN A:220 , PHE A:224	BINDING SITE FOR RESIDUE FMA A 233
3	AC3	SOFTWARE	PHE A:10 , PHE A:13 , TYR A:14 , MET A:25 , LYS B:60 , LYS B:61 , PRO B:64 , THR B:77 , SER B:78 , THR B:81 , ILE B:84 , LYS B:87 , TYR B:88 , HOH B:253	BINDING SITE FOR RESIDUE FMA B 232
4	AC4	SOFTWARE	MET B:1 , ASN B:2 , TRP B:4 , TYR B:6 , VAL B:132 , TYR B:177 , VAL B:184 , ALA B:185 , ASN B:193 , LEU B:199 , PHE B:201 , VAL B:213 , PHE B:224	BINDING SITE FOR RESIDUE FMA B 233

(no "SS Bond" information available for 1FVP)

(no "Cis Peptide Bond" information available for 1FVP)

(no "SAP(SNP)/Variant" information available for 1FVP)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BACTERIAL_LUCIFERASE	PS00494	Bacterial luciferase subunits signature.	LUXF_PHOPO	89-114	2	A:89-114 B:89-114

(no "Exon" information available for 1FVP)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:231
 aligned with LUXF_PHOPO | P12745 from UniProtKB/Swiss-Prot  Length:231

    Alignment length:231
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230 
           LUXF_PHOPO     1 MNKWNYGVFFVNFYNKGQQEPSKTMNNALETLRIIDEDTSIYDVINIDDHYLVKKDSEDKKLASFITLGEKLYVLATSENTVDIAAKYALPLVFKWDDINEERLKLLSFYNASASKYNKNIDLVRHQLMLHVNVNEAETVAKEELKLYIENYVACTQPSNFNGSIDSIIQSNVTGSYKDCLSYVANLAGKFDNTVDFLLCFESMQDQNKKKSVMIDLNNQVIKFRQDNNLI 231
               SCOP domains d1fvpa_ A: Non-fluorescent flavoprotein (luxF, FP390)                                                                                                                                                                                   SCOP domains
               CATH domains 1fvpA00 A:1-231 FMN dependent fluorescent proteins                                                                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee...........hhhhhhhhhhhhhhh.......eeee................eeee..eeeee....hhhhhhhh...eee........hhhhhhhhhhhhhhh.........eeeee.......hhhhhhhhhhhhhhhhhh..........hhhhhh......hhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------BACTERIAL_LUCIFERASE      --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fvp A   1 MNKWNYGVFFVNFYNKGQQEPSKTMNNALETLRIIDEDTSIYDVINIDDHYLVKKDSEDKKLAPFITLGEKLYVLATSENTVDIAAKYALPLVFKWDDINEERLKLLSFYNASASKYNKNIDLVRHQLMLHVNVNEAETVAKEELKLYIENYVACTQPSNFNGSIDSIIQSNVTGSYKDCLSYVANLAGKFDNTVDFLLCFESMQDQNKKKSVMIDLNNQVIKFRQDNNLI 231
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

Chain B from PDB  Type:PROTEIN  Length:231
 aligned with LUXF_PHOPO | P12745 from UniProtKB/Swiss-Prot  Length:231

    Alignment length:231
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230 
           LUXF_PHOPO     1 MNKWNYGVFFVNFYNKGQQEPSKTMNNALETLRIIDEDTSIYDVINIDDHYLVKKDSEDKKLASFITLGEKLYVLATSENTVDIAAKYALPLVFKWDDINEERLKLLSFYNASASKYNKNIDLVRHQLMLHVNVNEAETVAKEELKLYIENYVACTQPSNFNGSIDSIIQSNVTGSYKDCLSYVANLAGKFDNTVDFLLCFESMQDQNKKKSVMIDLNNQVIKFRQDNNLI 231
               SCOP domains d1fvpb_ B: Non-fluorescent flavoprotein (luxF, FP390)                                                                                                                                                                                   SCOP domains
               CATH domains 1fvpB00 B:1-231 FMN dependent fluorescent proteins                                                                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..........hhhhhhhhhhhhhhhhh......eeee.................eeee..eeeee...hhhhhhhhh...eee........hhhhhhhhhhhhh.............eeee........hhhhhhhhhhhhh.............hhhhhh.....hhhhhhhhhhhhhhh.....eeee......hhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------BACTERIAL_LUCIFERASE      --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fvp B   1 MNKWNYGVFFVNFYNKGQQEPSKTMNNALETLRIIDEDTSIYDVINIDDHYLVKKDSEDKKLAPFITLGEKLYVLATSENTVDIAAKYALPLVFKWDDINEERLKLLSFYNASASKYNKNIDLVRHQLMLHVNVNEAETVAKEELKLYIENYVACTQPSNFNGSIDSIIQSNVTGSYKDCLSYVANLAGKFDNTVDFLLCFESMQDQNKKKSVMIDLNNQVIKFRQDNNLI 231
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Bacterial luciferase-like (24)

Family: Non-fluorescent flavoprotein (luxF, FP390) (3)

Protein domain: Non-fluorescent flavoprotein (luxF, FP390) (2)

Photobacterium phosphoreum [TaxId: 659] (1)

1a	d1fvpa_	A:
1b	d1fvpb_	B:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

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Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: FMN dependent fluorescent proteins (19)

Photobacterium phosphoreum. Organism_taxid: 659. Strain: ifo 13896. Expression_system_vector_type: bacterium (1)

1a	1fvpA00	A:1-231
1b	1fvpB00	B:1-231

(no "Pfam Domain" information available for 1FVP)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (LUXF_PHOPO | P12745)

molecular function
	GO:0047646	alkanal monooxygenase (FMN-linked) activity	Catalysis of the reaction: R-CHO + reduced FMN + O2 = R-COOH + FMN + H2O + light.
	GO:0004497	monooxygenase activity	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
biological process
	GO:0008218	bioluminescence	The production of light by certain enzyme-catalyzed reactions in cells.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric/Biological Unit
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Description

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Ligands, Modified Residues, Ions (1, 4)

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