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(-) Description

Title :  X-RAY STRUCTURES OF THE ANTIGEN-BINDING DOMAINS FROM THREE VARIANTS OF HUMANIZED ANTI-P185-HER2 ANTIBODY 4D5 AND COMPARISON WITH MOLECULAR MODELING
 
Authors :  C. Eigenbrot, M. Randal, A. A. Kossiakoff, L. Presta
Date :  20 Oct 92  (Deposition) - 31 Oct 93  (Release) - 25 Aug 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Immunoglobulin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Eigenbrot, M. Randal, L. Presta, P. Carter, A. A. Kossiakoff
X-Ray Structures Of The Antigen-Binding Domains From Three Variants Of Humanized Anti-P185Her2 Antibody 4D5 And Comparison With Molecular Modeling.
J. Mol. Biol. V. 229 969 1993
PubMed-ID: 8095303  |  Reference-DOI: 10.1006/JMBI.1993.1099
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - IGG1-KAPPA 4D5 FV (LIGHT CHAIN)
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - IGG1-KAPPA 4D5 FV (HEAVY CHAIN)
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1FVC)

(-) Sites  (0, 0)

(no "Site" information available for 1FVC)

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:23 -A:88
2B:22 -B:96
3C:23 -C:88
4D:22 -D:96

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ser A:7 -Pro A:8
2Thr A:94 -Pro A:95
3Ser C:7 -Pro C:8
4Thr C:94 -Pro C:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1FVC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1FVC)

(-) Exons   (0, 0)

(no "Exon" information available for 1FVC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains d1fvca_ A: Immunoglobulin light chain kappa variable domain, VL-kappa                                         SCOP domains
               CATH domains 1fvcA00 A:1-109 Immunoglobulins                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.eeeee.....eeeeeee......eeeeeee......eeee....eee.....eeeeeee..eeeeee...hhhhh.eeeeeee.....eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1fvc A   1 DIQMTQSPSSLSASVGDRVTITCRASQDVNTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGQGTKVEIKRT 109
                                    10        20        30        40        50        60        70        80        90       100         


Chain B from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains d1fvcb_ B: Immunoglobulin heavy chain variable domain, VH                                                                SCOP domains
               CATH domains 1fvcB00 B:1-120 Immunoglobulins                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee..eee...eeeeeeeeee.......eeeeee.......eeeeeee....eeeee.....eeeeeee...eeeeeeeee.hhhhheeeeeeee.........eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1fvc B   1 EVQLVESGGGLVQPGGSLRLSCAASGFNIKDTYIHWVRQAPGKGLEWVARIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRWGGDGFYAMDYWGQGTLVTVSS 120
                                    10        20        30        40        50        60        70        80        90       100       110       120


Chain C from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains d1fvcc_ C: Immunoglobulin light chain kappa variable domain, VL-kappa                                        SCOP domains
               CATH domains 1fvcC00 C:1-108 Immunoglobulins                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee.eeeee.....eeeeeeee......eeeeee........eeee..eee.....eeeeeee.eeeeeee...hhhhheeeeeee......eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 1fvc C   1 DIQMTQSPSSLSASVGDRVTITCRASQDVNTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGQGTKVEIKR 108
                                    10        20        30        40        50        60        70        80        90       100        


Chain D from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains d1fvcd_ D: Immunoglobulin heavy chain variable domain, VH                                                                SCOP domains
               CATH domains 1fvcD00 D:1-120 Immunoglobulins                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee..eee...eeeeeeeeee........eeeeee......eeeeeee...eeeeee.......eeeee...eeeeeeeee.hhhhheeeeeee..........eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1fvc D   1 EVQLVESGGGLVQPGGSLRLSCAASGFNIKDTYIHWVRQAPGKGLEWVARIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRWGGDGFYAMDYWGQGTLVTVSS 120
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1FVC)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1FVC)

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  Cis Peptide Bonds
    Ser A:7 - Pro A:8   [ RasMol ]  
    Ser C:7 - Pro C:8   [ RasMol ]  
    Thr A:94 - Pro A:95   [ RasMol ]  
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  1fvc
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 Related Entries

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