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(-) Description

Title :  CRYSTAL STRUCTURE OF E.COLI YBHB PROTEIN, A NEW MEMBER OF THE MAMMALIAN PEBP FAMILY
 
Authors :  L. Serre, K. Pereira De Jesus, H. Benedetti, N. Bureaud, F. Schoentgen, C. Zelwer
Date :  08 Aug 00  (Deposition) - 18 Jul 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.66
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Pepb Family, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Serre, K. Pereira De Jesus, C. Zelwer, N. Bureaud, F. Schoentgen, H. Benedetti
Crystal Structures Of Ybhb And Ybcl From Escherichia Coli, Two Bacterial Homologues To A Raf Kinase Inhibitor Protein.
J. Mol. Biol. V. 310 617 2001
PubMed-ID: 11439028  |  Reference-DOI: 10.1006/JMBI.2001.4784
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL 17.1 KDA PROTEIN IN MODC-BIOA INTERGENIC REGION
    Chains: A
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Plasmid: PET14

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1EPE2Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:20 , MSE A:23 , ALA A:55 , PRO A:56 , TRP A:61 , HIS A:63 , ASP A:104 , GLY A:105 , ALA A:107 , PRO A:108 , PRO A:109 , HIS A:114 , PHE A:141 , HOH A:219 , HOH A:267 , HOH A:378BINDING SITE FOR RESIDUE EPE A 206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1FJJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1FJJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1FJJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1FJJ)

(-) Exons   (0, 0)

(no "Exon" information available for 1FJJ)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:159
 aligned with YBHB_ECOLI | P12994 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:159
                             1                                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149         
           YBHB_ECOLI     - -MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIERIDVDEGASGAMVGFNVHFHSLASASITAMFS 158
               SCOP domains d1fjja_ A: Hypothetical protein YbhB                                                                                                                            SCOP domains
               CATH domains 1fjjA00 A:0-158 Phosphatidylethanolamine-binding Protein;                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..........hhhh...............eeee.......eeeeeeee........eeeeeeeeee....ee..hhhhh........ee....................eeeeeeeeee...........hhhhhhhhhhhheeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fjj A   0 AmKLISNDLRDGDKLPHRHVFNGmGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAmPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIERIDVDEGASGAmVGFNVHFHSLASASITAmFS 158
                             |       9        19   |    29        39        49        59        69        79       |89        99       109       119       129       139       149      |  
                             |                    23-MSE                                                          87-MSE                                            138-MSE           156-MSE
                             1-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1FJJ)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (YBHB_ECOLI | P12994)
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1fjj
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  YBHB_ECOLI | P12994
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        YBHB_ECOLI | P12994: 1vi3

(-) Related Entries Specified in the PDB File

1a44 1A44 IS BOVINE PEBP
1b7a 1B7A IS BOVINE PEBP
1bd9 1BD9 IS HUMAN PEBP
1beh 1BEH IS HUMAN PEBP
1qou 1QOU IS CEN