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(-) Description

Title :  CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF THE MONOCLONAL ANTIBODY MAK33
 
Authors :  J. G. Augustine, A. De La Calle, G. Knarr, J. Buchner, C. A. Frederick
Date :  31 Jul 00  (Deposition) - 13 Sep 00  (Release) - 26 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  H,L
Keywords :  Fab, Bip, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. G. Augustine, A. De La Calle, G. Knarr, J. Buchner, C. A. Frederick
The Crystal Structure Of The Fab Fragment Of The Monoclonal Antibody Mak33. Implications For Folding And Interaction With The Chaperone Bip.
J. Biol. Chem. V. 276 3287 2001
PubMed-ID: 11036070  |  Reference-DOI: 10.1074/JBC.M005221200

(-) Compounds

Molecule 1 - MONOCLONAL ANTIBODY MAK33
    Chains: L
    Fragment: FAB LIGHT CHAIN
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - MONOCLONAL ANTIBODY MAK33
    Chains: H
    Fragment: FAB HEAVY CHAIN
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : HL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1FH5)

(-) Sites  (0, 0)

(no "Site" information available for 1FH5)

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1H:19 -H:93
2H:142 -H:197
3L:24 -L:89
4L:135 -L:195

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser L:8 -Pro L:9

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1FH5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1FH5)

(-) Exons   (0, 0)

(no "Exon" information available for 1FH5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain H from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                      
               SCOP domains d1fh5h1 H:4-120 Immunoglobulin heavy chain variable domain, VH                                              d1fh5h2 H:121-215 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma            SCOP domains
               CATH domains 1fh5H01 H:4-120 Immunoglobulins                                                                             1fh5H02 H:121-213 Immunoglobulins                                                       -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee.....eeeeee.........eeeeeee.....eeeeeee......ee.hhhhh..eeeeee....eeeeee...hhhhheeeeeeee..ee.....eeee.........eeee....eeeeeee.....eeee........eee...ee....eeeeeee...........eeeeeeehhhheeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1fh5 H   4 SGGGLVKPAGSLKLSCAASGFTFSSYYMYWVRQTPDKRLEWVATISDGGSYTYYPDSVKGRFTISRDNAKNNLYLQMSSLKSEDTAMYYCARDAMDYWGQGTLVTVSAAKTTPPSVYPLAVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSETVTCNVAHPASSTKVDKKIVPR 215
                                    13        23        33        43        53        63        73        83        93  ||   112       122       132|      147       157       167       177       187       197       207        
                                                                                                                       96|                       132|                                                                             
                                                                                                                       106                        138                                                                             


Chain L from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains d1fh5l1 L:2-108 Immunoglobulin light chain kappa variable domain, VL-kappa                                 d1fh5l2 L:109-214 Immunoglobulin light chain kappa constant domain, CL-kappa                               SCOP domains
               CATH domains 1fh5L01 L:2-109 Immunoglobulins                                                                             1fh5L02 L:110-212 Immunoglobulins                                                                      -- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee...........eeeee.......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhh...eeeeeeee..eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fh5 L   2 DIVLTQSPATLSVTPGESVSLSCRASQSISNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYYCQQSNSWPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE 214
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 4)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1FH5)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1FH5)

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  Cis Peptide Bonds
    Ser L:8 - Pro L:9   [ RasMol ]  
 

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 Related Entries

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