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(-) Description

Title :  LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN
 
Authors :  P. Nissen, J. Hansen, N. Ban, P. B. Moore, T. A. Steitz
Date :  26 Jul 00  (Deposition) - 28 Aug 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ribosome Assembly, Rna-Rna Complex, Ribozyme, Ribosomal Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Nissen, J. Hansen, N. Ban, P. B. Moore, T. A. Steitz
The Structural Basis Of Ribosome Activity In Peptide Bond Synthesis.
Science V. 289 920 2000
PubMed-ID: 10937990  |  Reference-DOI: 10.1126/SCIENCE.289.5481.920
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 23S RIBOSOMAL RNA
    Chains: A
    Fragment: DOMAIN V OF 23S RIBOSOMAL RNA
    Organism Scientific: HALOARCULA MARISMORTUI
    Organism Taxid: 2238
    Other Details: PART OF THE 50S LARGE RIBOSOMAL SUBUNIT
    Other Details - Source: CULTURED CELLS
 
Molecule 2 - R(P*CP*C*)-D(P*A)-R(P*(PU))
    Chains: B
    Engineered: YES
    Other Details: AN ANALOG OF A-SITE AMINOACYL-TRNA AND P- SITE PEPTIDYL-TRNA AS THEY ARE COVALENTLY LINKED BY THE TETRAHEDRAL CARBONYL CARBON INTERMEDIATE IN PEPTIDE BOND FORMATION. CONTAINS PU, PUROMYCIN-N-AMINOPHOSPHONIC ACID
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1PU1Mod. ResiduePUROMYCIN-N-AMINOPHOSPHONIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 1FFZ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1FFZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1FFZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1FFZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1FFZ)

(-) Exons   (0, 0)

(no "Exon" information available for 1FFZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:RNA  Length:496
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                1ffz A 2063 UUCCAGUGCGGAGUCUGGAGACACCCAGGGGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAGGACUCUCACUCCGGGAGGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGCUAUCUCAGCCGGGGACCCGGCGAAGAGUGCAAGAGCAAAAGAUAGCUUGACAGUGUUCUUCCCAACGAGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAGCCUGCUUGAUGCGGGCAAUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUUGUUCGCCUAUUAAAGGAGGUCGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUGU 2663
                                  2072      2082      2092      2102      2112      2122      2132   || 2242      2252      2262      2272      2282      2292      2302      2312      2322      2332     |2347      2357      2367      2377      2387      2397      2407      2417      2427      2437      2447      2457      2467      2477      2487      2497      2507      2517      2527      2537      2547      2557      2567      2577      2587      2597      2607      2617      2627      2637      2647      2657      
                                                                                                  2136|                                                                                                 2338|                                                                                                                                                                                                                                                                                                                               
                                                                                                   2237                                                                                                  2344                                                                                                                                                                                                                                                                                                                               


Chain B from PDB  Type:DNA/RNA  Length:4
                                     
                1ffz B   74 CCAa   77
                               |
                              77-PU
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1FFZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1FFZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1FFZ)

(-) Gene Ontology  (0, 0)

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 Related Entries

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(-) Related Entries Specified in the PDB File

1ffk COMPLETE ATOMIC STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT AT 2.4 A RESOLUTION
1fg0 LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH CC-PUROMYCIN