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(-) Description

Title :  CARBON MONOXIDE DEHYDROGENASE FROM HYDROGENOPHAGA PSEUDOFLAVA
 
Authors :  P. Haenzelmann, H. Dobbek, L. Gremer, R. Huber, O. Meyer
Date :  26 Jul 00  (Deposition) - 15 Sep 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Hydrolase, Dehydrogenase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Hanzelmann, H. Dobbek, L. Gremer, R. Huber, O. Meyer
The Effect Of Intracellular Molybdenum In Hydrogenophaga Pseudoflava On The Crystallographic Structure Of The Seleno-Molybdo-Iron-Sulfur Flavoenzyme Carbon Monoxide Dehydrogenase.
J. Mol. Biol. V. 301 1221 2000
PubMed-ID: 10966817  |  Reference-DOI: 10.1006/JMBI.2000.4023
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CUTS, IRON-SULFUR PROTEIN OF CARBON MONOXIDE DEHYDROGENASE
    ChainsA, D
    Organism ScientificHYDROGENOPHAGA PSEUDOFLAVA
    Organism Taxid47421
 
Molecule 2 - CUTL, MOLYBDOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE
    ChainsB, E
    Organism ScientificHYDROGENOPHAGA PSEUDOFLAVA
    Organism Taxid47421
 
Molecule 3 - CUTM, FLAVOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE
    ChainsC, F
    Organism ScientificHYDROGENOPHAGA PSEUDOFLAVA
    Organism Taxid47421

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 12)

Asymmetric/Biological Unit (5, 12)
No.NameCountTypeFull Name
1ARO2Mod. Amino AcidC-GAMMA-HYDROXY ARGININE
2CSZ2Mod. Amino AcidS-SELANYL CYSTEINE
3FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
4FES4Ligand/IonFE2/S2 (INORGANIC) CLUSTER
5PCD2Ligand/Ion(MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V)

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:100 , CYS A:101 , GLY A:102 , CYS A:104 , CYS A:136 , ARG A:137 , CYS A:138BINDING SITE FOR RESIDUE FES A 1907
2AC2SOFTWAREGLY A:41 , CYS A:42 , SER A:45 , HIS A:46 , CYS A:47 , GLY A:48 , CYS A:50 , LYS A:60 , CYS A:62BINDING SITE FOR RESIDUE FES A 1908
3AC3SOFTWAREGLN D:100 , CYS D:101 , GLY D:102 , CYS D:104 , CYS D:136 , ARG D:137 , CYS D:138BINDING SITE FOR RESIDUE FES D 1909
4AC4SOFTWAREGLY D:41 , CYS D:42 , SER D:45 , HIS D:46 , CYS D:47 , GLY D:48 , CYS D:50 , LYS D:60 , CYS D:62BINDING SITE FOR RESIDUE FES D 1910
5AC5SOFTWAREGLN A:100 , CYS A:138 , GLN B:237 , GLY B:266 , GLY B:267 , PHE B:268 , GLY B:269 , ALA B:382 , TYR B:383 , ARO B:384 , CSZ B:385 , GLN B:522 , GLY B:523 , GLN B:524 , HIS B:526 , THR B:529 , TYR B:562 , GLY B:563 , SER B:564 , ARG B:565 , SER B:566 , THR B:567 , CYS B:680 , THR B:682 , ILE B:684 , ASN B:685 , ILE B:688 , ILE B:689 , GLN B:692 , LYS B:753 , GLY B:754 , VAL B:755 , ALA B:756 , GLU B:757 , HOH B:2240 , HOH B:2389 , HOH B:2390 , HOH B:2391BINDING SITE FOR RESIDUE PCD B 1920
6AC6SOFTWAREGLN D:100 , CYS D:138 , GLN E:237 , GLY E:266 , GLY E:267 , PHE E:268 , GLY E:269 , ALA E:382 , TYR E:383 , ARO E:384 , CSZ E:385 , GLN E:522 , GLY E:523 , GLN E:524 , HIS E:526 , THR E:529 , THR E:561 , TYR E:562 , GLY E:563 , SER E:564 , ARG E:565 , SER E:566 , THR E:567 , CYS E:680 , THR E:682 , ILE E:684 , ASN E:685 , ILE E:689 , GLN E:692 , LYS E:753 , GLY E:754 , VAL E:755 , ALA E:756 , GLU E:757 , HOH E:2087 , HOH E:2188 , HOH E:2355 , HOH E:2367 , HOH E:2414BINDING SITE FOR RESIDUE PCD E 1921
7AC7SOFTWARESER A:45 , HIS A:46 , LYS C:29 , LEU C:30 , ALA C:32 , GLY C:33 , GLY C:34 , HIS C:35 , SER C:36 , LEU C:37 , ILE C:101 , ALA C:102 , GLY C:110 , THR C:111 , GLY C:114 , ASP C:115 , ALA C:117 , HIS C:118 , ASN C:123 , ASP C:124 , LEU C:161 , VAL C:166 , MET C:167 , LYS C:185 , GLY C:191 , ASP C:192 , TRP C:193 , HOH C:1981 , HOH C:2007 , HOH C:2024 , HOH C:2046BINDING SITE FOR RESIDUE FAD C 1922
8AC8SOFTWARESER D:45 , LYS F:29 , LEU F:30 , ALA F:32 , GLY F:33 , GLY F:34 , HIS F:35 , SER F:36 , LEU F:37 , ILE F:54 , ILE F:101 , ALA F:102 , GLY F:110 , THR F:111 , GLY F:114 , ASP F:115 , ALA F:117 , ASN F:123 , ASP F:124 , LEU F:161 , VAL F:166 , MET F:167 , LYS F:185 , GLY F:191 , ASP F:192 , TRP F:193 , HOH F:1961 , HOH F:1967 , HOH F:2013 , HOH F:2017BINDING SITE FOR RESIDUE FAD F 1923

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1FFV)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Phe B:425 -Pro B:426
2Met B:785 -Pro B:786
3Phe E:425 -Pro E:426
4Met E:785 -Pro E:786

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1FFV)

(-) PROSITE Motifs  (2, 4)

Asymmetric/Biological Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FAD_PCMHPS51387 PCMH-type FAD-binding domain profile.DCMM_HYDPS1-177
 
  2C:1-177
F:1-177
22FE2S_FER_2PS51085 2Fe-2S ferredoxin-type iron-sulfur binding domain profile.DCMS_HYDPS4-80
 
  2A:4-80
D:4-80

(-) Exons   (0, 0)

(no "Exon" information available for 1FFV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:155
 aligned with DCMS_HYDPS | P19915 from UniProtKB/Swiss-Prot  Length:163

    Alignment length:155
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152     
           DCMS_HYDPS     3 KKIITVNVNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDGRSVKSCTHLAVQCDGSEVLTVEGLANKGVLHAVREGFYKEHGLQCGFCTPGMLMRAYRFLQENPNPTEAEIRMGMTGNLCRCTGYQNIVKAVQYAARKLQE 157
               SCOP domains d1ffva2 A:3-81                                                                 d1ffva1 A:82-157                                                             SCOP domains
               CATH domains 1ffvA01 A:3-76  [code=3.10.20.30, no name defined]                        ----1ffvA02 A:81-156  [code=1.10.150.120, no name defined]                      - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeeee....hhhhhhhhh..................eeee..eeee.hhh.hhhhh..eeehhhhh......hhhhhhhhhh.......hhhhhhhhhhhhhhhh...hhhhhhhhh.........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -2FE2S_FER_2  PDB: A:4-80 UniProt: 4-80                                       ----------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ffv A   3 KKIITVNVNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDGRSVKSCTHLAVQCDGSEVLTVEGLANKGVLHAVQEGFYKEHGLQCGFCTPGMLMRAYRFLQENPNPTEAEIRMGMTGNLCRCTGYQNIVKAVQYAARKLQE 157
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152     

Chain B from PDB  Type:PROTEIN  Length:797
 aligned with DCML_HYDPS | P19913 from UniProtKB/Swiss-Prot  Length:803

    Alignment length:797
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       
           DCML_HYDPS     7 DAEARELALAGMRPRACAKEDARFIQGKGNYVDDIKMPGMLHMDIVRAPIAHGRIKKIHKDAALAMPGVHAVLTAEDLKPLKLHWMPTLAGDVAAVLADEKVHFQMQEVAIVIADDRYIAADAVEAVKVEYDELPVVIDPIDALKPDAPVLREDLAGKTSGAHGPREHHNHIFTWGAGDKAATDAVFANAPVTVSQHMYYPRVHPCPLETCGCVASFDPIKGDLTTYITSQAPHVVRTVVSMLSGIPESKVRIVSPDIGGGFGNKVGIYPGYVCAIVASIVLGRPVKWVEDRVENISTTAFARDYHMDGELAATPDGKILGLRVNVVADHGAFDACADPTKFPAGLFHICSGSYDIPRAHCSVKGVYTNKAPGGVAYRCSFRVTEAVYLIERMVDVLAQKLNMDKAEIRAKNFIRKEQFPYTTQFGFEYDSGDYHTALKKVLDAVDYPAWRAEQAARRADPNSPTLMGIGLVTFTEVVGAGPSKMCDILGVGMFDSCEIRIHPTGSAIARMGTITQGQGHQTTYAQIIATELGIPSEVIQVEEGDTSTAPYGLGTYGSRSTPVAGAAIALAARKIHAKARKIAAHMLEVNENDLDWEVDRFKVKGDDSKFKTMADIAWQAYHQPPAGLEPGLEAVHYYDPPNFTYPFGIYLCVVDIDRATGETKVRRFYALDDCGTRINPMIIEGQIHGGLTEGYAVAMGQQMPFDAQGNLLGNTLMDYFLPTAVETPHWETDHTVTPSPHHPIGAKGVAESPHVGSIPTFTAAVVDAFAHVGVTHLDMPHTSYRVWKSLKEHNLAL 803
               SCOP domains d1ffvb1 B:7-146 Carbon monoxide (CO) dehydrogenase molybdoprotein, N-domain                                                                 d1ffvb2 B:147-803 Carbon monoxide (CO) dehydrogenase molybdoprotein                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1ffvB01 B:7-141  [code=3.90.1170.50, no name defined]                                                                                  1ffvB02 B:142-209,B:307-383 Aldehyde Oxidoreductase; domain 4       1ffvB05 B:210-306 Aldehyde Oxidoreductase; domain 4                                              1ffvB02 B:142-209,B:307-383 Aldehyde Oxidoreductase; domain 4                --------------------------------------------------------1ffvB04 B:440-483,B:650-803                 1ffvB03 B:484-649 Aldehyde Oxidoreductase; domain 4                                                                                                                   1ffvB04 B:440-483,B:650-803 Aldehyde Oxidoreductase; domain 4                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh.........hhhhhh.....hhhhh.....eeeeeee.....eeeeeeehhhhhhh..eeeeehhhhhhhhh..eee.....eee.....ee.....eeeeeee.hhhhhhhhhhhheeeeee.....hhhhhh.......hhhhh...ee..ee.....eeeeeeeehhhhhhhhhhhh.eeeeeeeee...........eeeeeee....eeeeee...hhhhhhhhhhhhhh.hhh.eeee..............hhhhhhhhhhhhhhh..eeee.hhhhhhhhh.ee..eeeeeeeee.....eeeeeeeeeee................hhhhh.......eeeeeeeee......ee.......hhhhhhhhhhhhhhhhhhhhh...hhhhhhhh.hhhhh.ee.....ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeeee...........ee..ee..eeeeeee.....eeeee.......hhhhhhhhhhhhhhh.hhh.eeee................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhh.eee...eeee......eeehhhhhhhhhhh........eeeeeee........eeeeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh..............................eeee................hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ffv B   7 DAEARELALAGMGASRLRKEDARFIQGKGNYVDDIKMPGMLHMDIVRAPIAHGRIKKIHKDAALAMPGVHAVLTAEDLKPLKLHWMPTLAGDVAAVLADEKVHFQMQEVAIVIADDRYIAADAVEAVKVEYDELPVVIDPIDALKPDAPVLREDLAGKTSGAHGPREHHNHIFTWGAGDKAATDAVFANAPVTVSQHMYYPRVHPCPLETCGCVASFDPIKGDLTTYITSQAPHVVRTVVSMLSGIPESKVRIVSPDIGGGFGNKVGIYPGYVCAIVASIVLGRPVKWVEDRVENISTTAFARDYHMDGELAATPDGKILGLRVNVVADHGAFDACADPTKFPAGLFHICSGSYDIPRAHCSVKGVYTNKAPGGVAYrcSFRVTEAVYLIERMVDVLAQKLNMDKAEIRAKNFIRKEQFPYTTQFGFEYDSGDYHTALKKVLDAVDYPALRAEQAARRADPNSPTLMGIGLVTFTEVVGAGPSKMCDILGVGMFDSCEIRIHPTGSAIARMGTITQGQGHQTTYAQIIATELGIPSEVIQVEEGDTSTAPYGLGTYGSRSTPVAGAAIALAARKIHAKARKIAAHMLEVNENDLDWEVDRFKVKGDDSKFKTMADIAWQAYHQPPAGLEPGLEAVHYYDPPNFTYPFGIYLCVVDIDRATGETKVRRFYALDDCGTRINPMIIEGQIHGGLTEGYAVAMGQQMPFDAQGNLLGNTLMDYFLPTAVETPHWETDHTVTPSPHHPIGAKGVAESPHVGSIPTFTAAVVDAFAHVGVTHLDMPHTSYRVWKSLKEHNLAL 803
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       
                                                                                                                                                                                                                                                                                                                                                                                                                   384-ARO                                                                                                                                                                                                                                                                                                                                                                                                                               
                                                                                                                                                                                                                                                                                                                                                                                                                    385-CSZ                                                                                                                                                                                                                                                                                                                                                                                                                              

Chain C from PDB  Type:PROTEIN  Length:287
 aligned with DCMM_HYDPS | P19914 from UniProtKB/Swiss-Prot  Length:287

    Alignment length:287
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       
           DCMM_HYDPS     1 MIPPRFEYHAPKSVGEAVALLGQLGSDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGIREEGSTVVIGAMTVENDLISSPIVQARLPLLAEAAKLIADPQVRNRGTIGGDIAHGHPGNDHPALSIAVEAHFVLEGPNGRRTVPADGFFLGTYMTLLEENEVMVEIRVPAFAQGTGWAYEKLKRKTGDWATAGCAVVMRKSGNTVSHIRIALTNVAPTALRREGGRSRLLGKAFTKEAVQAAADAAIAICEPAEDLRGDADYKTAMAGQMVKRALNAAWARCA 287
               SCOP domains d1ffvc2 C:1-177 Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain                                                                                               d1ffvc1 C:178-287 Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain                           SCOP domains
               CATH domains 1ffvC01 C:1-54                                        -----1ffvC03 C:60-173  [code=3.30.465.10, no name defined]                                                             ------1ffvC02 C:180-284  [code=3.30.390.50, no name defined]                                                   --- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee...hhhhhhhhhhhhh..eeee....hhhhhhhh......eeee...hhhhh.eeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh.hhhhhhhh.....hhhhhhhhh..eeeeee..eeeeee....eee..ee......eeeeeeee......eeeeeee.........eeeeeeeeee..eeeeeeeeee......eehhhhhhh......hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE FAD_PCMH  PDB: C:1-177 UniProt: 1-177                                                                                                                                            -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ffv C   1 MIPPRFEYHAPKSVGEAVALLGQLGSDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGIREEGSTVVIGAMTVENDLISSPIVQARLPLLAEAAKLIADPQVRNRGTIGGDIAHGDPGNDHPALSIAVEAHFVLEGPNGRRTVPADGFFLGTYMTLLEENEVMVEIRVPAFAQGTGWAYEKLKRKTGDWATAGCAVVMRKSGNTVSHIRIALTNVAPTALRAEAAEAALLGKAFTKEAVQAAADAAIAICEPAEDLRGDADYKTAMAGQMVKRALNAAWARCA 287
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       

Chain D from PDB  Type:PROTEIN  Length:156
 aligned with DCMS_HYDPS | P19915 from UniProtKB/Swiss-Prot  Length:163

    Alignment length:156
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151      
           DCMS_HYDPS     2 AKKIITVNVNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDGRSVKSCTHLAVQCDGSEVLTVEGLANKGVLHAVREGFYKEHGLQCGFCTPGMLMRAYRFLQENPNPTEAEIRMGMTGNLCRCTGYQNIVKAVQYAARKLQE 157
               SCOP domains d1ffvd2 D:2-81 Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domaind1ffvd1 D:82-157                                                             SCOP domains
               CATH domains -1ffvD01 D:3-76  [code=3.10.20.30, no name defined]                        ----1ffvD02 D:81-156  [code=1.10.150.120, no name defined]                      - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee..eeeeeee....hhhhhhhhh..................eeee..eeee.hhh.hhhh...eeehhhhh......hhhhhhhhhh.......hhhhhhhhhhhhhhhh...hhhhhhhhh.........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) --2FE2S_FER_2  PDB: D:4-80 UniProt: 4-80                                       ----------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ffv D   2 AKKIITVNVNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDGRSVKSCTHLAVQCDGSEVLTVEGLANKGVLHAVQEGFYKEHGLQCGFCTPGMLMRAYRFLQENPNPTEAEIRMGMTGNLCRCTGYQNIVKAVQYAARKLQE 157
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151      

Chain E from PDB  Type:PROTEIN  Length:797
 aligned with DCML_HYDPS | P19913 from UniProtKB/Swiss-Prot  Length:803

    Alignment length:797
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       
           DCML_HYDPS     7 DAEARELALAGMRPRACAKEDARFIQGKGNYVDDIKMPGMLHMDIVRAPIAHGRIKKIHKDAALAMPGVHAVLTAEDLKPLKLHWMPTLAGDVAAVLADEKVHFQMQEVAIVIADDRYIAADAVEAVKVEYDELPVVIDPIDALKPDAPVLREDLAGKTSGAHGPREHHNHIFTWGAGDKAATDAVFANAPVTVSQHMYYPRVHPCPLETCGCVASFDPIKGDLTTYITSQAPHVVRTVVSMLSGIPESKVRIVSPDIGGGFGNKVGIYPGYVCAIVASIVLGRPVKWVEDRVENISTTAFARDYHMDGELAATPDGKILGLRVNVVADHGAFDACADPTKFPAGLFHICSGSYDIPRAHCSVKGVYTNKAPGGVAYRCSFRVTEAVYLIERMVDVLAQKLNMDKAEIRAKNFIRKEQFPYTTQFGFEYDSGDYHTALKKVLDAVDYPAWRAEQAARRADPNSPTLMGIGLVTFTEVVGAGPSKMCDILGVGMFDSCEIRIHPTGSAIARMGTITQGQGHQTTYAQIIATELGIPSEVIQVEEGDTSTAPYGLGTYGSRSTPVAGAAIALAARKIHAKARKIAAHMLEVNENDLDWEVDRFKVKGDDSKFKTMADIAWQAYHQPPAGLEPGLEAVHYYDPPNFTYPFGIYLCVVDIDRATGETKVRRFYALDDCGTRINPMIIEGQIHGGLTEGYAVAMGQQMPFDAQGNLLGNTLMDYFLPTAVETPHWETDHTVTPSPHHPIGAKGVAESPHVGSIPTFTAAVVDAFAHVGVTHLDMPHTSYRVWKSLKEHNLAL 803
               SCOP domains d1ffve1 E:7-146 Carbon monoxide (CO) dehydrogenase molybdoprotein, N-domain                                                                 d1ffve2 E:147-803 Carbon monoxide (CO) dehydrogenase molybdoprotein                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1ffvE01 E:7-141  [code=3.90.1170.50, no name defined]                                                                                  1ffvE02 E:142-209,E:307-383 Aldehyde Oxidoreductase; domain 4       1ffvE05 E:210-306 Aldehyde Oxidoreductase; domain 4                                              1ffvE02 E:142-209,E:307-383 Aldehyde Oxidoreductase; domain 4                --------------------------------------------------------1ffvE04 E:440-483,E:650-803                 1ffvE03 E:484-649 Aldehyde Oxidoreductase; domain 4                                                                                                                   1ffvE04 E:440-483,E:650-803 Aldehyde Oxidoreductase; domain 4                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh.........hhhhhh......hhhh.....eeeeeee.....eeeeeeehhhhhhh..eeeeehhhhhhhhh..eee.....eee.....ee.....eeeeeee.hhhhhhhhhhhheeeeee.....hhhhhh.......hhhhh...ee..ee.....eeeeeeeehhhhhhhhhhhh.eeeeeeeee...........eeeeeee....eeeeee...hhhhhhhhhhhhhh.hhh.eeee..............hhhhhhhhhhhhhhh..eeee.hhhhhhhhh.ee..eeeeeeeee.....eeeeeeeeeee................hhhhh........eeeeeeee......ee.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhh.ee.....ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeeee...........ee..ee..eeeeeee.....eeeee.......hhhhhhhhhhhhhhh.hhh.eeee....................hhhhhhhhhhhhhhhhhhhhhhhhh..hhh.eee...eeee..eeeeeeehhhhhhhhhhh.........eeeeee........eeeeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh..............................eeee................hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ffv E   7 DAEARELALAGMGASRLRKEDARFIQGKGNYVDDIKMPGMLHMDIVRAPIAHGRIKKIHKDAALAMPGVHAVLTAEDLKPLKLHWMPTLAGDVAAVLADEKVHFQMQEVAIVIADDRYIAADAVEAVKVEYDELPVVIDPIDALKPDAPVLREDLAGKTSGAHGPREHHNHIFTWGAGDKAATDAVFANAPVTVSQHMYYPRVHPCPLETCGCVASFDPIKGDLTTYITSQAPHVVRTVVSMLSGIPESKVRIVSPDIGGGFGNKVGIYPGYVCAIVASIVLGRPVKWVEDRVENISTTAFARDYHMDGELAATPDGKILGLRVNVVADHGAFDACADPTKFPAGLFHICSGSYDIPRAHCSVKGVYTNKAPGGVAYrcSFRVTEAVYLIERMVDVLAQKLNMDKAEIRAKNFIRKEQFPYTTQFGFEYDSGDYHTALKKVLDAVDYPALRAEQAARRADPNSPTLMGIGLVTFTEVVGAGPSKMCDILGVGMFDSCEIRIHPTGSAIARMGTITQGQGHQTTYAQIIATELGIPSEVIQVEEGDTSTAPYGLGTYGSRSTPVAGAAIALAARKIHAKARKIAAHMLEVNENDLDWEVDRFKVKGDDSKFKTMADIAWQAYHQPPAGLEPGLEAVHYYDPPNFTYPFGIYLCVVDIDRATGETKVRRFYALDDCGTRINPMIIEGQIHGGLTEGYAVAMGQQMPFDAQGNLLGNTLMDYFLPTAVETPHWETDHTVTPSPHHPIGAKGVAESPHVGSIPTFTAAVVDAFAHVGVTHLDMPHTSYRVWKSLKEHNLAL 803
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       
                                                                                                                                                                                                                                                                                                                                                                                                                   384-ARO                                                                                                                                                                                                                                                                                                                                                                                                                               
                                                                                                                                                                                                                                                                                                                                                                                                                    385-CSZ                                                                                                                                                                                                                                                                                                                                                                                                                              

Chain F from PDB  Type:PROTEIN  Length:287
 aligned with DCMM_HYDPS | P19914 from UniProtKB/Swiss-Prot  Length:287

    Alignment length:287
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       
           DCMM_HYDPS     1 MIPPRFEYHAPKSVGEAVALLGQLGSDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGIREEGSTVVIGAMTVENDLISSPIVQARLPLLAEAAKLIADPQVRNRGTIGGDIAHGHPGNDHPALSIAVEAHFVLEGPNGRRTVPADGFFLGTYMTLLEENEVMVEIRVPAFAQGTGWAYEKLKRKTGDWATAGCAVVMRKSGNTVSHIRIALTNVAPTALRREGGRSRLLGKAFTKEAVQAAADAAIAICEPAEDLRGDADYKTAMAGQMVKRALNAAWARCA 287
               SCOP domains d1ffvf2 F:1-177 Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain                                                                                               d1ffvf1 F:178-287 Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain                           SCOP domains
               CATH domains 1ffvF01 F:1-54                                        -----1ffvF03 F:60-173  [code=3.30.465.10, no name defined]                                                             ------1ffvF02 F:180-284  [code=3.30.390.50, no name defined]                                                   --- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee...hhhhhhhhhhhhh..eeee....hhhhhhhh......eeee...hhhhh.eeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhh.....hhhhhhhhh..eeeeee..eeeeee....eee..ee......eeeeeeee......eeeeeee.........eeeeeeeeee..eeeeeeeeee......eehhhhhhh......hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE FAD_PCMH  PDB: F:1-177 UniProt: 1-177                                                                                                                                            -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ffv F   1 MIPPRFEYHAPKSVGEAVALLGQLGSDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGIREEGSTVVIGAMTVENDLISSPIVQARLPLLAEAAKLIADPQVRNRGTIGGDIAHGDPGNDHPALSIAVEAHFVLEGPNGRRTVPADGFFLGTYMTLLEENEVMVEIRVPAFAQGTGWAYEKLKRKTGDWATAGCAVVMRKSGNTVSHIRIALTNVAPTALRAEAAEAALLGKAFTKEAVQAAADAAIAICEPAEDLRGDADYKTAMAGQMVKRALNAAWARCA 287
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       

   Legend:   → Mismatch (orange background)
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 Classification and Annotation

(-) SCOP Domains  (6, 12)

Asymmetric/Biological Unit

(-) CATH Domains  (7, 20)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1FFV)

(-) Gene Ontology  (12, 19)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,D   (DCMS_HYDPS | P19915)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0018492    carbon-monoxide dehydrogenase (acceptor) activity    Catalysis of the reaction: CO + H2O + acceptor = CO2 + reduced acceptor.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain B,E   (DCML_HYDPS | P19913)
molecular function
    GO:0018492    carbon-monoxide dehydrogenase (acceptor) activity    Catalysis of the reaction: CO + H2O + acceptor = CO2 + reduced acceptor.
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0030151    molybdenum ion binding    Interacting selectively and non-covalently with molybdenum (Mo) ions.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain C,F   (DCMM_HYDPS | P19914)
molecular function
    GO:0018492    carbon-monoxide dehydrogenase (acceptor) activity    Catalysis of the reaction: CO + H2O + acceptor = CO2 + reduced acceptor.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DCML_HYDPS | P199131ffu
        DCMM_HYDPS | P199141ffu
        DCMS_HYDPS | P199151ffu

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1FFV)