1FBA - JenaLib

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Title :   THE CRYSTAL STRUCTURE OF FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE FROM DROSOPHILA MELANOGASTER AT 2.5 ANGSTROMS RESOLUTION

Authors :   K. Piontek, G. Hester, O. Brenner-Holzach

Date :   08 Jun 92 (Deposition) - 31 Oct 93 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Lyase(Aldehyde) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Hester, O. Brenner-Holzach, F. A. Rossi, M. Struck-Donatz, K. H. Winterhalter, J. D. Smit, K. Piontek
The Crystal Structure Of Fructose-1, 6-Bisphosphate Aldolase From Drosophila Melanogaster At 2. 5 A Resolution.
Febs Lett. V. 292 237 1991
PubMed-ID: 1959612 | Reference-DOI: 10.1016/0014-5793(91)80875-4
(for further references see the PDB file header)

Molecule 1 - FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE
	Chains	:	A, B, C, D
	EC Number	:	4.1.2.13
	Engineered	:	YES
	Organism Common	:	FRUIT FLY
	Organism Scientific	:	DROSOPHILA MELANOGASTER
	Organism Taxid	:	7227

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 4)

No.	Name	Count	Type	Full Name
1	ACE	4	Mod. Amino Acid	ACETYL GROUP

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	FBA	UNKNOWN	LYS A:229	NULL
2	FBB	UNKNOWN	LYS B:229	NULL
3	FBC	UNKNOWN	LYS C:229	NULL
4	FBD	UNKNOWN	LYS D:229	NULL

(no "SS Bond" information available for 1FBA)

Asymmetric/Biological Unit

No.	Residues
1	Thr A:157	-	Pro A:158
2	Thr B:157	-	Pro B:158
3	Thr C:157	-	Pro C:158
4	Thr D:157	-	Pro D:158

(no "SAP(SNP)/Variant" information available for 1FBA)

Asymmetric/Biological Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ALDOLASE_CLASS_I	PS00158	Fructose-bisphosphate aldolase class-I active site.	ALF_DROME	222-232	4	A:221-231 B:221-231 C:221-231 D:221-231

(no "Exon" information available for 1FBA)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:361
 aligned with ALF_DROME | P07764 from UniProtKB/Swiss-Prot  Length:361

    Alignment length:361
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360 
            ALF_DROME     1 MTTYFNYPSKELQDELREIAQKIVAPGKGILAADESGPTMGKRLQDIGVENTEDNRRAYRQLLFSTDPKLAENISGVILFHETLYQKADDGTPFAEILKKKGIILGIKVDKGVVPLFGSEDEVTTQGLDDLAARCAQYKKDGCDFAKWRCVLKIGKNTPSYQSILENANVLARYASICQSQRIVPIVEPEVLPDGDHDLDRAQKVTETVLAAVYKALSDHHVYLEGTLLKPNMVTAGQSAKKNTPEEIALATVQALRRTVPAAVTGVTFLSGGQSEEEATVNLSAINNVPLIRPWALTFSYGRALQASVLRAWAGKKENIAAGQNELLKRAKANGDAAQGKYVAGSAGAGSGSLFVANHAY 361
               SCOP domains d1fbaa_ A: Fructose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -1fbaA00 A:1-363 Aldolase class I                                                                                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhh.....eeeee...hhhhhhhhhh......hhhhhhhhhhhh...hhhhh.eeeeee.hhhh.........hhhhhhh...eeeee....eee.......eee.....hhhhhhhhhh..eeeeeeeeee........hhhhhhhhhhhhhhhhhhhh...eeeeeeee.......hhhhhhhhhhhhhhhhhhhhh....hhh.ee...............hhhhhhhhhhhhhhh......eeee......hhhhhhhhhhh.........eeeeee.hhh.hhhhhhh......hhhhhhhhhhhhhhhhhh........................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDOLASE_CL--------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fba A   0 xTTYFNYPSKELQDELREIAQKIVAPGKGILAADESGPTMGKRLQDIGVENTEDNRRAYRQLLFSTDPKLAENISGVILFHETLYQKADDGTPFAEILKKKGIILGIKVDKGVVPLFGSEDEVTTQGLDDLAARCAQYKKDGCDFAKWRCVLKIGKNTPSYQSILENANVLARYASICQSQRIVPIVEPEVLPDGDHDLDRAQKVTETVLAAVYKALSDHHVYLEGTLLKPNMVTAGQSAKKNTPEEIALATVQALRRTVPAAVTGVTFLSGGQSEEEATVNLSAINNVPLIRPWALTFSYGRALQASVLRAWAGKKENIAAGQNELLKRAKANGDAAQGKYVAGSAGAGSGSLFVANHAY 363
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       240       250       260       270       280       290       300       310       320       330       340  ||   352       362 
                            |                                                                                                                                                                                                                                           238|                                                                                                    343| 349|            
                            0-ACE                                                                                                                                                                                                                                        240                                                                                                     345  351

Chain B from PDB  Type:PROTEIN  Length:361
 aligned with ALF_DROME | P07764 from UniProtKB/Swiss-Prot  Length:361

    Alignment length:361
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360 
            ALF_DROME     1 MTTYFNYPSKELQDELREIAQKIVAPGKGILAADESGPTMGKRLQDIGVENTEDNRRAYRQLLFSTDPKLAENISGVILFHETLYQKADDGTPFAEILKKKGIILGIKVDKGVVPLFGSEDEVTTQGLDDLAARCAQYKKDGCDFAKWRCVLKIGKNTPSYQSILENANVLARYASICQSQRIVPIVEPEVLPDGDHDLDRAQKVTETVLAAVYKALSDHHVYLEGTLLKPNMVTAGQSAKKNTPEEIALATVQALRRTVPAAVTGVTFLSGGQSEEEATVNLSAINNVPLIRPWALTFSYGRALQASVLRAWAGKKENIAAGQNELLKRAKANGDAAQGKYVAGSAGAGSGSLFVANHAY 361
               SCOP domains d1fbab_ B: Fructose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -1fbaB00 B:1-363 Aldolase class I                                                                                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhh.....eeeee...hhhhhhhhh.......hhhhhhhhhhhh...hhhhh.eeeeee.hhhh.........hhhhhhh...eeeee....eee.......eee.....hhhhhhhhhh..eeeeeeeeee........hhhhhhhhhhhhhhhhhhhh...eeeeeeee.......hhhhhhhhhhhhhhhhhhhhh....hhh.ee...............hhhhhhhhhhhhhhh......eeee......hhhhhhhhhhh.........eeeeee.hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh........................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDOLASE_CL--------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fba B   0 xTTYFNYPSKELQDELREIAQKIVAPGKGILAADESGPTMGKRLQDIGVENTEDNRRAYRQLLFSTDPKLAENISGVILFHETLYQKADDGTPFAEILKKKGIILGIKVDKGVVPLFGSEDEVTTQGLDDLAARCAQYKKDGCDFAKWRCVLKIGKNTPSYQSILENANVLARYASICQSQRIVPIVEPEVLPDGDHDLDRAQKVTETVLAAVYKALSDHHVYLEGTLLKPNMVTAGQSAKKNTPEEIALATVQALRRTVPAAVTGVTFLSGGQSEEEATVNLSAINNVPLIRPWALTFSYGRALQASVLRAWAGKKENIAAGQNELLKRAKANGDAAQGKYVAGSAGAGSGSLFVANHAY 363
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       240       250       260       270       280       290       300       310       320       330       340  ||   352       362 
                            0-ACE                                                                                                                                                                                                                                       238|                                                                                                    343| 349|            
                                                                                                                                                                                                                                                                         240                                                                                                     345  351

Chain C from PDB  Type:PROTEIN  Length:361
 aligned with ALF_DROME | P07764 from UniProtKB/Swiss-Prot  Length:361

    Alignment length:361
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360 
            ALF_DROME     1 MTTYFNYPSKELQDELREIAQKIVAPGKGILAADESGPTMGKRLQDIGVENTEDNRRAYRQLLFSTDPKLAENISGVILFHETLYQKADDGTPFAEILKKKGIILGIKVDKGVVPLFGSEDEVTTQGLDDLAARCAQYKKDGCDFAKWRCVLKIGKNTPSYQSILENANVLARYASICQSQRIVPIVEPEVLPDGDHDLDRAQKVTETVLAAVYKALSDHHVYLEGTLLKPNMVTAGQSAKKNTPEEIALATVQALRRTVPAAVTGVTFLSGGQSEEEATVNLSAINNVPLIRPWALTFSYGRALQASVLRAWAGKKENIAAGQNELLKRAKANGDAAQGKYVAGSAGAGSGSLFVANHAY 361
               SCOP domains d1fbac_ C: Fructose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -1fbaC00 C:1-363 Aldolase class I                                                                                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhh.....eeeee...hhhhhhhhhh......hhhhhhhhhhhhh..hhhhh.eeeeee...hhh........hhhhhhh...eeeee....eee.......eee.....hhhhhhhhhh..eeeeeeeeee........hhhhhhhhhhhhhhhhhhhh...eeeeeeee.......hhhhhhhhhhhhhhhhhhhhh....hhh.ee...............hhhhhhhhhhhhhhh......eeee......hhhhhhhhhhh.........eeeeee.hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh........................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDOLASE_CL--------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fba C   0 xTTYFNYPSKELQDELREIAQKIVAPGKGILAADESGPTMGKRLQDIGVENTEDNRRAYRQLLFSTDPKLAENISGVILFHETLYQKADDGTPFAEILKKKGIILGIKVDKGVVPLFGSEDEVTTQGLDDLAARCAQYKKDGCDFAKWRCVLKIGKNTPSYQSILENANVLARYASICQSQRIVPIVEPEVLPDGDHDLDRAQKVTETVLAAVYKALSDHHVYLEGTLLKPNMVTAGQSAKKNTPEEIALATVQALRRTVPAAVTGVTFLSGGQSEEEATVNLSAINNVPLIRPWALTFSYGRALQASVLRAWAGKKENIAAGQNELLKRAKANGDAAQGKYVAGSAGAGSGSLFVANHAY 363
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       240       250       260       270       280       290       300       310       320       330       340  ||   352       362 
                            0-ACE                                                                                                                                                                                                                                       238|                                                                                                    343| 349|            
                                                                                                                                                                                                                                                                         240                                                                                                     345  351

Chain D from PDB  Type:PROTEIN  Length:361
 aligned with ALF_DROME | P07764 from UniProtKB/Swiss-Prot  Length:361

    Alignment length:361
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360 
            ALF_DROME     1 MTTYFNYPSKELQDELREIAQKIVAPGKGILAADESGPTMGKRLQDIGVENTEDNRRAYRQLLFSTDPKLAENISGVILFHETLYQKADDGTPFAEILKKKGIILGIKVDKGVVPLFGSEDEVTTQGLDDLAARCAQYKKDGCDFAKWRCVLKIGKNTPSYQSILENANVLARYASICQSQRIVPIVEPEVLPDGDHDLDRAQKVTETVLAAVYKALSDHHVYLEGTLLKPNMVTAGQSAKKNTPEEIALATVQALRRTVPAAVTGVTFLSGGQSEEEATVNLSAINNVPLIRPWALTFSYGRALQASVLRAWAGKKENIAAGQNELLKRAKANGDAAQGKYVAGSAGAGSGSLFVANHAY 361
               SCOP domains d1fbad_ D: Fructose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -1fbaD00 D:1-363 Aldolase class I                                                                                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhh.....eeeee...hhhhhhhhhh......hhhhhhhhhhhh...hhhhh.eeeeee.hhhh.........hhhhhhh...eeeee....eee.......eee.....hhhhhhhhhh..eeeeeeeeee........hhhhhhhhhhhhhhhhhhhh...eeeeeeee.......hhhhhhhhhhhhhhhhhhhhh....hhh.ee...............hhhhhhhhhhhhhhh......eeee......hhhhhhhhhhh.........eeeeee.hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh........................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDOLASE_CL--------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fba D   0 xTTYFNYPSKELQDELREIAQKIVAPGKGILAADESGPTMGKRLQDIGVENTEDNRRAYRQLLFSTDPKLAENISGVILFHETLYQKADDGTPFAEILKKKGIILGIKVDKGVVPLFGSEDEVTTQGLDDLAARCAQYKKDGCDFAKWRCVLKIGKNTPSYQSILENANVLARYASICQSQRIVPIVEPEVLPDGDHDLDRAQKVTETVLAAVYKALSDHHVYLEGTLLKPNMVTAGQSAKKNTPEEIALATVQALRRTVPAAVTGVTFLSGGQSEEEATVNLSAINNVPLIRPWALTFSYGRALQASVLRAWAGKKENIAAGQNELLKRAKANGDAAQGKYVAGSAGAGSGSLFVANHAY 363
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       240       250       260       270       280       290       300       310       320       330       340  ||   352       362 
                            0-ACE                                                                                                                                                                                                                                       238|                                                                                                    343| 349|            
                                                                                                                                                                                                                                                                         240                                                                                                     345  351

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Aldolase (457)

Family: Class I aldolase (182)

Protein domain: Fructose-1,6-bisphosphate aldolase (39)

Fruit fly (Drosophila melanogaster) [TaxId: 7227] (1)

1a	d1fbaa_	A:
1b	d1fbab_	B:
1c	d1fbac_	C:
1d	d1fbad_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Aldolase class I (887)

Fruit fly (Drosophila melanogaster) (1)

1a	1fbaA00	A:1-363
1b	1fbaB00	B:1-363
1c	1fbaC00	C:1-363
1d	1fbaD00	D:1-363

(no "Pfam Domain" information available for 1FBA)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (ALF_DROME | P07764)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004332	fructose-bisphosphate aldolase activity	Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde-3-phosphate.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
	GO:0006096	glycolytic process	The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
	GO:0007498	mesoderm development	The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue.
	GO:0007095	mitotic G2 DNA damage checkpoint	A mitotic cell cycle checkpoint that detects and negatively regulates progression through the G2/M transition of the cell cycle in response to DNA damage.
cellular component
	GO:0031430	M band	The midline of aligned thick filaments in a sarcomere; location of specific proteins that link thick filaments. Depending on muscle type the M band consists of different numbers of M lines.
	GO:0030018	Z disc	Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Asymmetric/Biological Unit
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		Thr D:157 - Pro D:158	[ RasMol ]

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Description

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Chains, Units

Ligands, Modified Residues, Ions (1, 4)

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Cis Peptide Bonds (4, 4)

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