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(-) Description

Title :  COAGULATION FACTOR VIII, NMR, 1 STRUCTURE
 
Authors :  S. Veeraraghavan, J. D. Baleja, G. E. Gilbert
Date :  30 Jun 96  (Deposition) - 11 Jan 97  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A
Keywords :  Coagulation Factor (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Veeraraghavan, J. D. Baleja, G. E. Gilbert
Structure And Topography Of The Membrane-Binding C2 Domain Of Factor Viii In The Presence Of Dodecylphosphocholine Micelles.
Biochem. J. V. 332 549 1998
PubMed-ID: 9601086
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COAGULATION FACTOR VIII
    ChainsA
    EngineeredYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  
NMR Structure 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1FAC)

(-) Sites  (0, 0)

(no "Site" information available for 1FAC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1FAC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1FAC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (12, 12)

NMR Structure (12, 12)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_001209R2323CFA8_HUMANDisease (HEMA)137852473AR2C
02UniProtVAR_028707R2323GFA8_HUMANDisease (HEMA)  ---AR2G
03UniProtVAR_001210R2323HFA8_HUMANDisease (HEMA)137852474AR2H
04UniProtVAR_028708R2323LFA8_HUMANDisease (HEMA)  ---AR2L
05UniProtVAR_028709R2326GFA8_HUMANDisease (HEMA)  ---AR5G
06UniProtVAR_001211R2326LFA8_HUMANDisease (HEMA)137852360AR5L
07UniProtVAR_028710R2326PFA8_HUMANDisease (HEMA)  ---AR5P
08UniProtVAR_001212R2326QFA8_HUMANDisease (HEMA)137852360AR5Q
09UniProtVAR_028711Q2330PFA8_HUMANDisease (HEMA)  ---AQ9P
10UniProtVAR_028712W2332RFA8_HUMANDisease (HEMA)  ---AW11R
11UniProtVAR_065324I2336FFA8_HUMANDisease (HEMA)  ---AI15F
12UniProtVAR_028713R2339TFA8_HUMANDisease (HEMA)  ---AR18T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FA58C_2PS01286 Coagulation factors 5/8 type C domain (FA58C) signature 2.FA8_HUMAN2172-2188
2329-2345
  1-
A:8-21

(-) Exons   (1, 1)

NMR Structure (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000003602562aENSE00001645223X:154251028-154250685344FA8_HUMAN1-48480--
1.3ENST000003602563ENSE00001422135X:154227875-154227754122FA8_HUMAN48-89420--
1.4ENST000003602564ENSE00001096342X:154225370-154225248123FA8_HUMAN89-130420--
1.5bENST000003602565bENSE00002195289X:154221423-154221211213FA8_HUMAN130-201720--
1.6ENST000003602566ENSE00001633063X:154215580-15421551269FA8_HUMAN201-224240--
1.7bENST000003602567bENSE00002147243X:154213078-154212962117FA8_HUMAN224-263400--
1.8ENST000003602568ENSE00001653886X:154197827-154197606222FA8_HUMAN263-337750--
1.9aENST000003602569aENSE00001776938X:154194962-154194701262FA8_HUMAN337-424880--
1.10aENST0000036025610aENSE00001708410X:154194416-154194245172FA8_HUMAN424-481580--
1.11ENST0000036025611ENSE00001607410X:154189443-15418935094FA8_HUMAN482-513320--
1.12ENST0000036025612ENSE00001748476X:154185446-154185232215FA8_HUMAN513-584720--
1.13ENST0000036025613ENSE00001769821X:154182317-154182167151FA8_HUMAN585-635510--
1.14ENST0000036025614ENSE00001591329X:154176182-154175973210FA8_HUMAN635-705710--
1.15bENST0000036025615bENSE00001311652X:154159951-1541568463106FA8_HUMAN705-174010360--
1.16ENST0000036025616ENSE00001096353X:154134848-154134695154FA8_HUMAN1740-1791520--
1.17ENST0000036025617ENSE00001096366X:154133298-154133086213FA8_HUMAN1792-1862710--
1.18ENST0000036025618ENSE00001096327X:154132799-154132571229FA8_HUMAN1863-1939770--
1.19ENST0000036025619ENSE00001096346X:154132363-154132181183FA8_HUMAN1939-2000620--
1.20ENST0000036025620ENSE00001297698X:154130442-154130326117FA8_HUMAN2000-2039400--
1.21ENST0000036025621ENSE00001413135X:154129717-15412964672FA8_HUMAN2039-2063250--
1.22ENST0000036025622ENSE00001411839X:154128226-15412814186FA8_HUMAN2063-2091290--
1.23ENST0000036025623ENSE00001403942X:154124507-154124352156FA8_HUMAN2092-2143520--
1.25ENST0000036025625ENSE00001308463X:154091502-154091358145FA8_HUMAN2144-2192490--
1.26ENST0000036025626ENSE00001096349X:154090141-154089993149FA8_HUMAN2192-2241500--
1.27ENST0000036025627ENSE00001096386X:154088883-154088707177FA8_HUMAN2242-2300590--
1.28aENST0000036025628aENSE00001878069X:154066027-1540640701958FA8_HUMAN2301-2351511A:1-2121

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:21
 aligned with FA8_HUMAN | P00451 from UniProtKB/Swiss-Prot  Length:2351

    Alignment length:21
                                  2331      2341 
           FA8_HUMAN   2322 TRYLRIHPQSWVHQIALRMEV 2342
               SCOP domains d1faca_ A:            SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhh... Sec.struct. author
             SAPs(SNPs) (1) -C--G---P-R---F--T--- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -G--L---------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -H--P---------------- SAPs(SNPs) (3)
             SAPs(SNPs) (4) -L--Q---------------- SAPs(SNPs) (4)
                    PROSITE -------FA58C_2        PROSITE
               Transcript 1 Exon 1.28a            Transcript 1
                1fac A    1 TRYLRIHPQSWVHQIALRMEV   21
                                    10        20 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Peptides (792)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1FAC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1FAC)

(-) Gene Ontology  (21, 21)

NMR Structure(hide GO term definitions)
Chain A   (FA8_HUMAN | P00451)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0048208    COPII vesicle coating    The addition of COPII proteins and adaptor proteins to ER membranes during the formation of transport vesicles, forming a vesicle coat.
    GO:0006888    ER to Golgi vesicle-mediated transport    The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
    GO:0006953    acute-phase response    An acute inflammatory response that involves non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals.
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0007597    blood coagulation, intrinsic pathway    A protein activation cascade that contributes to blood coagulation and consists of the interactions among high molecular weight kininogen, prekallikrein, and factor XII that lead to the activation of clotting factor X.
    GO:0007599    hemostasis    The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0002576    platelet degranulation    The regulated exocytosis of secretory granules containing preformed mediators such as histamine and serotonin by a platelet.
cellular component
    GO:0030134    COPII-coated ER to Golgi transport vesicle    A vesicle with a coat formed of the COPII coat complex proteins. The COPII coat complex is formed by the Sec23p/Sec24p and the Sec13p/Sec31p heterodimers. COPII-associated vesicles transport proteins from the rough endoplasmic reticulum to the Golgi apparatus (anterograde transport).
    GO:0000139    Golgi membrane    The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
    GO:0005788    endoplasmic reticulum lumen    The volume enclosed by the membranes of the endoplasmic reticulum.
    GO:0033116    endoplasmic reticulum-Golgi intermediate compartment membrane    The lipid bilayer surrounding any of the compartments of the endoplasmic reticulum (ER)-Golgi intermediate compartment system.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0031093    platelet alpha granule lumen    The volume enclosed by the membrane of the platelet alpha granule.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FA8_HUMAN | P004511cfg 1d7p 1iqd 2r7e 3cdz 3hnb 3hny 3hob 3j2q 3j2s 4bdv 4ki5 4pt6 4xzu 5k8d

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