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Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF AN ANTI-CARBOHYDRATE ANTIBODY DIRECTED AGAINST VIBRIO CHOLERAE O1 IN COMPLEX WITH ANTIGEN

Authors :   P. M. Alzari, H. Souchon

Date :   10 Jun 00 (Deposition) - 02 Aug 00 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym./Biol. Unit : H,L

Keywords :   Anti-Carbohydrate Antibody, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Villeneuve, H. Souchon, M. M. Riottot, J. C. Mazie, P. Lei, C. P. Glaudemans, P. Kovac, J. M. Fournier, P. M. Alzari
Crystal Structure Of An Anti-Carbohydrate Antibody Directed Against Vibrio Cholerae O1 In Complex With Antigen: Molecular Basis For Serotype Specificity.
Proc. Natl. Acad. Sci. Usa V. 97 8433 2000
PubMed-ID: 10880560 | Reference-DOI: 10.1073/PNAS.060022997
(for further references see the PDB file header)

Molecule 1 - ANTIBODY S-20-4, FAB FRAGMENT, LIGHT CHAIN
	Chains	:	L
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Secretion	:	ASCITES

Molecule 2 - ANTIBODY S-20-4, FAB FRAGMENT, HEAVY CHAIN
	Chains	:	H
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Secretion	:	ASCITES

		1	2
Asymmetric/Biological Unit	:	H	L

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1F4W)

(no "Site" information available for 1F4W)

Asymmetric/Biological Unit

No.	Residues
1	H:22	-	H:96
2	H:144	-	H:199
3	L:22	-	L:90
4	L:137	-	L:196

Asymmetric/Biological Unit

No.	Residues
1	Tyr L:143	-	Pro L:144
2	Phe H:150	-	Pro H:151
3	Glu H:152	-	Pro H:153
4	Trp H:192	-	Pro H:193

(no "SAP(SNP)/Variant" information available for 1F4W)

(no "PROSITE Motif" information available for 1F4W)

(no "Exon" information available for 1F4W)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain H from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                        
               SCOP domains d1f4wh1 H:1-117 Immunoglobulin heavy chain variable domain, VH                                                       d1f4wh2 H:118-216 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                     SCOP domains
               CATH domains 1f4wH01 H:1-117 Immunoglobulins                                                                                      1f4wH02 H:118-216 Immunoglobulins                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee...ee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee.hhhh.ee........eeeeeehhh.eeeeee...hhhhheeeeeeeee..eeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee........eee...eee..eeeeeeeeeee.........eeeeeehhhheeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f4w H   1 EVQLEESGGGLVTPGGSLRLSCAASGYVFSTYDMSWVRQTPEKRLEWVAFISSGGGRTSYPDTVKGRFTISRDDAKNTLYLQMSSLQSEDTAMYYCTRHFYAVLDYWGRGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP 216
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Chain L from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains d1f4wl1 L:1-110 Immunoglobulin light chain lambda variable domain, VL-lambda                                  d1f4wl2 L:111-210 Immunoglobulin light chain lambda constant domain, CL-lambda                       SCOP domains
               CATH domains 1f4wL01 L:1-110 Immunoglobulins                                                                               1f4wL02 L:111-209 Immunoglobulins                                                                  - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee..eeee....eeeeeeee.....hhhhh.eeeeee...eeeeeee...ee.......eeeeee..eeeeeee..hhhhheeeeeeeee..eeee...eeeee........eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..ee....eee...ee.....eeeeeeeeeehhhhhhh..eeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f4w L   1 QAVVTQESALTTSPGETVTLTCRSSTGTVTTSNYANWVQEKPDHLFTGLIGATNNRAAGVPVRFSGSLIGGKAALTITGAQTEDEAIYFCALWYSGHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTNPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLS 210
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Immunoglobulins (2282)

House mouse (Mus musculus) (616)

1a	1f4wH02	H:118-216
1b	1f4wL01	L:1-110
1c	1f4wL02	L:111-209
1d	1f4wH01	H:1-117

(no "Pfam Domain" information available for 1F4W)

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1F4W)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Glu H:152 - Pro H:153	[ RasMol ]
		Phe H:150 - Pro H:151	[ RasMol ]
		Trp H:192 - Pro H:193	[ RasMol ]
		Tyr L:143 - Pro L:144	[ RasMol ]

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	1f4w
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SS Bonds (4, 4)

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