Chain A from PDB Type:PROTEIN Length:157
aligned with CAPSD_CMVFN | P69466 from UniProtKB/Swiss-Prot Length:218
Alignment length:157
71 81 91 101 111 121 131 141 151 161 171 181 191 201 211
CAPSD_CMVFN 62 ERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLVSRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQANNKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV 218
SCOP domains d1f15a_ A: Cucumovirus coat protein SCOP domains
CATH domains 1f15A00 A:62-218 Positive standed ss RNA viruses, Chain A CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......ee..eeee.........eeeee...hhhhhh....eeeeeeeeeee.......eeeeeee..........hhhhhhhh.....eee................hhhhheehhhhh.eeeeee..........eeeeeeeeee.......... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1f15 A 62 ERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLVSRLQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQANNKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV 218
71 81 91 101 111 121 131 141 151 161 171 181 191 201 211
Chain B from PDB Type:PROTEIN Length:190
aligned with CAPSD_CMVFN | P69466 from UniProtKB/Swiss-Prot Length:218
Alignment length:190
38 48 58 68 78 88 98 108 118 128 138 148 158 168 178 188 198 208 218
CAPSD_CMVFN 29 DANFRVLSQQLSRLNKTLAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLVSRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQANNKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV 218
SCOP domains d1f15b_ B: Cucumovirus coat protein SCOP domains
CATH domains 1f15B00 B:29-218 Positive standed ss RNA viruses, Chain A CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhhhhhhh...................eeeeeeee.........eeeee...hhhhhh....eeeeeeeeee.......eeeeeeee........hhhhhhhhhh.....eeee..........eeeee.hhhhee.hhhh.eeeeeee..........eeeeeeeee.......... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1f15 B 29 DANFRVLSQQLSRLNKTLAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLVSRLQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQANNKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV 218
38 48 58 68 78 88 98 108 118 128 138 148 158 168 178 188 198 208 218
Chain C from PDB Type:PROTEIN Length:191
aligned with CAPSD_CMVFN | P69466 from UniProtKB/Swiss-Prot Length:218
Alignment length:191
37 47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217
CAPSD_CMVFN 28 ADANFRVLSQQLSRLNKTLAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLVSRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQANNKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV 218
SCOP domains d1f15c_ C: Cucumovirus coat protein SCOP domains
CATH domains 1f15C00 C:28-218 Positive standed ss RNA viruses, Chain A CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhhhhhhhh...................eeeeeeee...........eee...hhhhhh.......eeeeeeee......eeeeeeee.........hhhhhhh.......eeee..........eeeee.hhhh...hhhh.eeeeeee.........eeeeeeeeee.......... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1f15 C 28 ADANFRVLSQQLSRLNKTLAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLVSRLQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQANNKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV 218
37 47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217
Legend: |
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→ Mismatch |
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→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |