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(-) Description

Title :  CRYSTAL STRUCTURE OF THE MULTIMERIZATION DOMAIN OF THE PHOSPHOPROTEIN FROM SENDAI VIRUS
 
Authors :  N. Tarbouriech, J. Curran, R. W. H. Ruigrok, W. P. Burmeister
Date :  11 May 00  (Deposition) - 20 Sep 00  (Release) - 16 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Four Stranded Coiled Coil, Viral Polymerase, Sendai Virus, Tetramer, Viral Protein, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Tarbouriech, J. Curran, R. W. Ruigrok, W. P. Burmeister
Tetrameric Coiled Coil Domain Of Sendai Virus Phosphoprotein.
Nat. Struct. Biol. V. 7 777 2000
PubMed-ID: 10966649  |  Reference-DOI: 10.1038/79013

(-) Compounds

Molecule 1 - NUCLEOCAPSID PHOSPHOPROTEIN
    Chains: A
    EC Number: 2.7.7.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PT7_7
    Expression System Strain: BL21-DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: MULTIMERIZATION DOMAIN (320-433)
    Organism Scientific: SENDAI VIRUS (STRAIN HARRIS)
    Organism Taxid: 11196
    Strain: HARRIS
    Synonym: RNA POLYMERASE ALPHA SUBUNIT

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2EMC1Ligand/IonETHYL MERCURY ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2EMC4Ligand/IonETHYL MERCURY ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:49 , THR A:50 , VAL A:53 , CYS A:54 , HOH A:1045BINDING SITE FOR RESIDUE EMC A 1002
2AC2SOFTWAREASN A:71BINDING SITE FOR RESIDUE CA A 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1EZJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1EZJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1EZJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1EZJ)

(-) Exons   (0, 0)

(no "Exon" information available for 1EZJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:114
 aligned with PHOSP_SENDH | P04859 from UniProtKB/Swiss-Prot  Length:568

    Alignment length:114
                                   329       339       349       359       369       379       389       399       409       419       429    
          PHOSP_SENDH   320 ENTSSMKEMATLLTSLGVIQSAQEFESSRDASYVFARRALKSANYAEMTFNVCGLILSAEKSSARKVDENKQLLKQIQESVESFRDIYKRFSEYQKEQNSLLMSNLSTLHIITD 433
               SCOP domains d1ezja_ A: Multimerization domain of the phosphoprotein from sendai virus                                          SCOP domains
               CATH domains 1ezjA01 A:2-63  [code=1.10.287.320, no name defined]          1ezjA02 A:64-115                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 1ezj A   2 ENTSSMKEMATLLTSLGVIQSAQEFESSRDASYVFARRALKSANYAEMTFNVCGLILSAEKSSARKVDENKQLLKQIQESVESFRDIYKRFSEYQKEQNSLLMSNLSTLHIITD 115
                                    11        21        31        41        51        61        71        81        91       101       111
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Coiled coil proteins (689)

(-) CATH Domains  (2, 2)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1EZJ)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A   (PHOSP_SENDH | P04859)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003968    RNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
biological process
    GO:0039689    negative stranded viral RNA replication    A viral genome replication process where the template genome is negative stranded, single stranded RNA ((-)ssRNA).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0001172    transcription, RNA-templated    The cellular synthesis of RNA on a template of RNA.
    GO:0019079    viral genome replication    Any process involved directly in viral genome replication, including viral nucleotide metabolism.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.

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  1ezj
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PHOSP_SENDH | P04859: 1r4g

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