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(-) Description

Title :  STRUCTURE OF A RECOMBINANT WINGED BEAN CHYMOTRYPSIN INHIBITOR
 
Authors :  J. K. Dattagupta, C. Chakrabarti, S. Ravichandran, S. Ghosh
Date :  07 May 00  (Deposition) - 24 May 00  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Biol. Unit 3:  A  (2x)
Keywords :  Beta Trefoil, Hydrolase Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Ravichandran, J. Dasgupta, C. Chakrabarti, S. Ghosh, M. Singh, J. K. Dattagupta
The Role Of Asn14 In The Stability And Conformation Of The Reactive-Site Loop Of Winged Bean Chymotrypsin Inhibitor: Crystal Structures Of Two Point Mutants Asn14-->Lys And Asn14-->Asp.
Protein Eng. V. 14 349 2001
PubMed-ID: 11438758  |  Reference-DOI: 10.1093/PROTEIN/14.5.349
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CHYMOTRYPSIN INHIBITOR
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPTRC99A
    Expression System Taxid562
    Expression System Vector TypePLASMID
    OrganSEED
    Organism CommonWINGED BEAN
    Organism ScientificPSOPHOCARPUS TETRAGONOLOBUS
    Organism Taxid3891
    SynonymRWCI-3

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (1x)A
Biological Unit 2 (2x)A
Biological Unit 3 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1SO45Ligand/IonSULFATE ION
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1SO45Ligand/IonSULFATE ION
Biological Unit 2 (1, 10)
No.NameCountTypeFull Name
1SO410Ligand/IonSULFATE ION
Biological Unit 3 (1, 10)
No.NameCountTypeFull Name
1SO410Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:26 , SER A:128 , HOH A:380BINDING SITE FOR RESIDUE SO4 A 900
2AC2SOFTWARESER A:69 , LEU A:70 , SER A:91 , TRP A:93 , LYS A:111 , HOH A:231 , HOH A:321 , HOH A:323 , HOH A:373BINDING SITE FOR RESIDUE SO4 A 901
3AC3SOFTWAREPRO A:25 , HIS A:26 , ILE A:27 , HIS A:30 , ARG A:50 , HIS A:127 , LEU A:171 , GLU A:172 , HOH A:377BINDING SITE FOR RESIDUE SO4 A 902
4AC4SOFTWAREASP A:156 , ARG A:157 , HOH A:354BINDING SITE FOR RESIDUE SO4 A 903
5AC5SOFTWAREHIS A:30 , SER A:126 , HIS A:127BINDING SITE FOR RESIDUE SO4 A 904

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:44 -A:88
2A:138 -A:147

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1EYL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1EYL)

(-) PROSITE Motifs  (1, 1)

Asymmetric Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SOYBEAN_KUNITZPS00283 Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature.ICW3_PSOTE28-44  1A:7-23
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SOYBEAN_KUNITZPS00283 Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature.ICW3_PSOTE28-44  1A:7-23
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SOYBEAN_KUNITZPS00283 Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature.ICW3_PSOTE28-44  2A:7-23
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SOYBEAN_KUNITZPS00283 Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature.ICW3_PSOTE28-44  2A:7-23

(-) Exons   (0, 0)

(no "Exon" information available for 1EYL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:179
 aligned with ICW3_PSOTE | P10822 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:179
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192         
           ICW3_PSOTE    23 TADDDLVDAEGNLVENGGTYYLLPHIWAHGGGIETAKTGNEPCPLTVVRSPNEVSKGEPIRISSQFLSLFIPRGSLVALGFANPPSCAASPWWTVVDSPQGPAVKLSQQKLPEKDILVFKFEKVSHSNIHVYKLLYCQHDEEDVKCDQYIGIHRDRNGNRRLVVTEENPLELVLLKAKS 201
               SCOP domains d1eyla_ A: chymotrypsin inhibitor WCI                                                                                                                                               SCOP domains
               CATH domains 1eylA00 A:2-180  [code=2.80.10.50, no name defined]                                                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................eeeeee.hhhhh..eeee.........eeee..........eeeee............eeeee..............................hhhhh..eeeee........eeeeeeee....eeeeeeeeeee.....eeeeee.....eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----SOYBEAN_KUNITZ   ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1eyl A   2 EFDDDLVDAEGNLVENGGTYYLLPHIWAHGGGIETAKTGNEPCPLTVVRSPNEVSKGEPIRISSQFLSLFIPRGSLVALGFANPPSCAASPWWTVVDSPQGPAVKLSQQKLPEKDILVFKFEKVSHSNIHVYKLLYCQHDEEDVKCDQYIGIHRDRNGNRRLVVTEENPLELVLLKAKS 180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171         

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1EYL)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A   (ICW3_PSOTE | P10822)
molecular function
    GO:0004866    endopeptidase inhibitor activity    Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides.
    GO:0030414    peptidase inhibitor activity    Stops, prevents or reduces the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds.
    GO:0004867    serine-type endopeptidase inhibitor activity    Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme.
biological process
    GO:0010951    negative regulation of endopeptidase activity    Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins.
    GO:0010466    negative regulation of peptidase activity    Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ICW3_PSOTE | P108221fmz 1fn0 1wbc 1xg6 2bea 2beb 2esu 2et2 2qyi 2wbc 3i29 3i2a 3i2x 3qyd 3veq 4h9w 4ha2 4tlp 4wbc

(-) Related Entries Specified in the PDB File

4wbc 4WBC CONTAINS THE SAME PROTEIN IN THE NATIVE FORM