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(-) Description

Title :  THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE RABBIT KIDNEY DEFENSIN, RK-1
 
Authors :  A. M. Mcmanus, N. F. Dawson, J. D. Wade, D. J. Craik
Date :  26 Apr 00  (Deposition) - 02 May 01  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Alpha Defensin, Triple-Stranded Beta-Sheet, Antimicrobial Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. M. Mcmanus, N. F. Dawson, J. D. Wade, L. E. Carrington, D. J. Winzor, D. J. Craik
Three-Dimensional Structure Of Rk-1: A Novel Alpha-Defensin Peptide.
Biochemistry V. 39 15757 2000
PubMed-ID: 11123900  |  Reference-DOI: 10.1021/BI000457L
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RK-1 DEFENSIN
    ChainsA
    OrganKIDNEY
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    SynonymALPHA-DEFISIN

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

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(-) SS Bonds  (3, 3)

NMR Structure
No.Residues
1A:3 -A:29
2A:5 -A:19
3A:9 -A:28

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:32
 aligned with RK1_RABIT | P81655 from UniProtKB/Swiss-Prot  Length:32

    Alignment length:32
                                    10        20        30  
             RK1_RABIT    1 MPCSCKKYCDPWEVIDGSCGLFNSKYICCREK 32
               SCOP domains d1ewsa_ A: Alpha-defensin rk-1   SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author ...eee......eeeee........eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                  1ews A  1 MPCSCKKYCDPWEVIDGSCGLFNSKYICCREK 32
                                    10        20        30  

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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (RK1_RABIT | P81655)
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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