1EV9 - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   RAT GLUTATHIONE S-TRANSFERASE A1-1 MUTANT W21F WITH GSO3 BOUND

Authors :   E. T. Adman, I. Le Trong, R. E. Stenkamp, B. S. Nieslanik, E. C. Dietze, G C. Ibarra, W. M. Atkins

Date :   19 Apr 00 (Deposition) - 07 Feb 01 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,C,D
Biol. Unit 1: A  (2x)
Biol. Unit 2: C,D  (1x)

Keywords :   Disordered C-Terminal Helices, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. T. Adman, I. Le Trong, R. E. Stenkamp, B. S. Nieslanik, E. C. Dietze, G. Tai, C. Ibarra, W. M. Atkins
Localization Of The C-Terminus Of Rat Glutathione S-Transferase A1-1: Crystal Structure Of Mutants W21F And W21F/F220Y.
Proteins V. 42 192 2001
PubMed-ID: 11119643 | Reference-DOI: 10.1002/1097-0134(20010201)42:2<192::AID-PROT60>3.0 .CO;2-#

Molecule 1 - GLUTATHIONE S-TRANSFERASE A1-1
	Chains	:	A, C, D
	EC Number	:	2.5.1.18
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PKKGTB34-W21F
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Mutation	:	YES
	Organism Common	:	NORWAY RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116

		1	2	3
Asymmetric Unit	:	A	C	D
Biological Unit 1 (2x)	:	A
Biological Unit 2 (1x)	:		C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	GTS	3	Ligand/Ion	GLUTATHIONE SULFONIC ACID
2	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	GTS	2	Ligand/Ion	GLUTATHIONE SULFONIC ACID
2	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	GTS	2	Ligand/Ion	GLUTATHIONE SULFONIC ACID
2	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:77 , ASP A:85 , MET A:86 , ARG A:89	BINDING SITE FOR RESIDUE SO4 A 260
2	AC2	SOFTWARE	LYS C:84 , ASP C:85 , MET C:86 , ARG C:89	BINDING SITE FOR RESIDUE SO4 C 261
3	AC3	SOFTWARE	THR C:77 , MET D:86 , ARG D:89	BINDING SITE FOR RESIDUE SO4 D 262
4	AC4	SOFTWARE	TYR A:9 , ARG A:15 , LYS A:45 , ASP A:53 , GLN A:54 , VAL A:55 , GLN A:67 , THR A:68 , ASP A:101 , ARG A:131 , PHE A:220 , HOH A:458 , HOH A:468 , HOH A:470 , HOH A:472 , HOH A:554 , HOH A:686	BINDING SITE FOR RESIDUE GTS A 230
5	AC5	SOFTWARE	TYR C:9 , PHE C:10 , ARG C:15 , LYS C:45 , ASP C:53 , GLN C:54 , VAL C:55 , GLN C:67 , THR C:68 , ASP D:101 , ARG D:131	BINDING SITE FOR RESIDUE GTS C 240
6	AC6	SOFTWARE	ASP C:101 , ARG C:131 , TYR D:9 , PHE D:10 , ARG D:15 , LYS D:45 , ASP D:53 , GLN D:54 , VAL D:55 , PRO D:56 , GLN D:67 , THR D:68 , HOH D:593	BINDING SITE FOR RESIDUE GTS D 250

(no "SS Bond" information available for 1EV9)

Asymmetric Unit

No.	Residues
1	Val A:55	-	Pro A:56
2	Val C:55	-	Pro C:56
3	Val D:55	-	Pro D:56

(no "SAP(SNP)/Variant" information available for 1EV9)

Asymmetric Unit (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GST_NTER	PS50404	Soluble glutathione S-transferase N-terminal domain profile.	GSTA1_RAT	3-83	3	A:3-83 C:3-83 D:3-83
2	GST_CTER	PS50405	Soluble glutathione S-transferase C-terminal domain profile.	GSTA1_RAT	85-208	3	A:85-207 C:85-207 D:85-207

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GST_NTER	PS50404	Soluble glutathione S-transferase N-terminal domain profile.	GSTA1_RAT	3-83	2	A:3-83 - -
2	GST_CTER	PS50405	Soluble glutathione S-transferase C-terminal domain profile.	GSTA1_RAT	85-208	2	A:85-207 - -

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GST_NTER	PS50404	Soluble glutathione S-transferase N-terminal domain profile.	GSTA1_RAT	3-83	2	- C:3-83 D:3-83
2	GST_CTER	PS50405	Soluble glutathione S-transferase C-terminal domain profile.	GSTA1_RAT	85-208	2	- C:85-207 D:85-207

(no "Exon" information available for 1EV9)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:219
 aligned with GSTA1_RAT | P00502 from UniProtKB/Swiss-Prot  Length:222

    Alignment length:219
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211         
            GSTA1_RAT     2 SGKPVLHYFNARGRMECIRWLLAAAGVEFDEKFIQSPEDLEKLKKDGNLMFDQVPMVEIDGMKLAQTRAILNYIATKYDLYGKDMKERALIDMYTEGILDLTEMIMQLVICPPDQKEAKTALAKDRTKNRYLPAFEKVLKSHGQDYLVGNRLTRVDIHLLELLLYVEEFDASLLTSFPLLKAFKSRISSLPNVKKFLQPGSQRKLPVDAKQIEEARKIF 220
               SCOP domains d1ev9a2 A:2-79 Class alpha GST                                                d1ev9a1 A:80-220 Class alpha GST                                                                                                              SCOP domains
               CATH domains 1ev9A01 A:2-81,A:191-209 Glutaredoxin                                           1ev9A02 A:82-190  [code=1.20.1050.10, no name defined]                                                       1ev9A01            ----------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.....hhhhhhhhhhh....eeeee.hhhhhhhhhhh.........eeee..eeeehhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GST_NTER  PDB: A:3-83 UniProt: 3-83                                              -GST_CTER  PDB: A:85-207 UniProt: 85-208                                                                                     ------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ev9 A   2 SGKPVLHYFNARGRMECIRFLLAAAGVEFDEKFIQSPEDLEKLKKDGNLMFDQVPMVEIDGMKLAQTRAILNYIATKYDLYGKDMKERALIDMYSEGILDLTEMIMQLVICPPDQKEAKTALAKDRTKNRYLPAFEKVLKSHGQDYLVGNKLTRVDIHLLELLLYVEEFDASLLTSFPLLKAFKSRISSLPNVKKFLQPGSQRKLPMDAKQIEEARKIF 220
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211

Chain C from PDB  Type:PROTEIN  Length:207
 aligned with GSTA1_RAT | P00502 from UniProtKB/Swiss-Prot  Length:222

    Alignment length:207
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       
            GSTA1_RAT     2 SGKPVLHYFNARGRMECIRWLLAAAGVEFDEKFIQSPEDLEKLKKDGNLMFDQVPMVEIDGMKLAQTRAILNYIATKYDLYGKDMKERALIDMYTEGILDLTEMIMQLVICPPDQKEAKTALAKDRTKNRYLPAFEKVLKSHGQDYLVGNRLTRVDIHLLELLLYVEEFDASLLTSFPLLKAFKSRISSLPNVKKFLQPGSQRKLPV 208
               SCOP domains d1ev9c2 C:2-79 Class alpha GST                                                d1ev9c1 C:80-208 Class alpha GST                                                                                                  SCOP domains
               CATH domains 1ev9C01 C:2-81,C:191-208 Glutaredoxin                                           1ev9C02 C:82-190  [code=1.20.1050.10, no name defined]                                                       1ev9C01            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..hhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhh........eeee..eeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GST_NTER  PDB: C:3-83 UniProt: 3-83                                              -GST_CTER  PDB: C:85-207 UniProt: 85-208                                                                                      PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ev9 C   2 SGKPVLHYFNARGRMECIRFLLAAAGVEFDEKFIQSPEDLEKLKKDGNLMFDQVPMVEIDGMKLAQTRAILNYIATKYDLYGKDMKERALIDMYSEGILDLTEMIMQLVICPPDQKEAKTALAKDRTKNRYLPAFEKVLKSHGQDYLVGNKLTRVDIHLLELLLYVEEFDASLLTSFPLLKAFKSRISSLPNVKKFLQPGSQRKLPM 208
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Chain D from PDB  Type:PROTEIN  Length:216
 aligned with GSTA1_RAT | P00502 from UniProtKB/Swiss-Prot  Length:222

    Alignment length:216
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211      
            GSTA1_RAT     2 SGKPVLHYFNARGRMECIRWLLAAAGVEFDEKFIQSPEDLEKLKKDGNLMFDQVPMVEIDGMKLAQTRAILNYIATKYDLYGKDMKERALIDMYTEGILDLTEMIMQLVICPPDQKEAKTALAKDRTKNRYLPAFEKVLKSHGQDYLVGNRLTRVDIHLLELLLYVEEFDASLLTSFPLLKAFKSRISSLPNVKKFLQPGSQRKLPVDAKQIEEAR 217
               SCOP domains d1ev9d2 D:2-79 Class alpha GST                                                d1ev9d1 D:80-217 Class alpha GST                                                                                                           SCOP domains
               CATH domains 1ev9D01 D:2-81,D:191-209 Glutaredoxin                                           1ev9D02 D:82-190  [code=1.20.1050.10, no name defined]                                                       1ev9D01            -------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee.....hhhhhhhhhhhh...eeeee.hhhhhhhhhhh.........eeee..eeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -GST_NTER  PDB: D:3-83 UniProt: 3-83                                              -GST_CTER  PDB: D:85-207 UniProt: 85-208                                                                                     --------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ev9 D   2 SGKPVLHYFNARGRMECIRFLLAAAGVEFDEKFIQSPEDLEKLKKDGNLMFDQVPMVEIDGMKLAQTRAILNYIATKYDLYGKDMKERALIDMYSEGILDLTEMIMQLVICPPDQKEAKTALAKDRTKNRYLPAFEKVLKSHGQDYLVGNKLTRVDIHLLELLLYVEEFDASLLTSFPLLKAFKSRISSLPNVKKFLQPGSQRKLPMDAKQIEEAR 217
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Glutaredoxin (620)

Homologous Superfamily: Glutaredoxin (617)

Norway rat (Rattus norvegicus) (10)

1a	1ev9A01	A:2-81,A:191-209
1b	1ev9D01	D:2-81,D:191-209
1c	1ev9C01	C:2-81,C:191-208

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 (267)

Homologous Superfamily: [code=1.20.1050.10, no name defined] (249)

Norway rat (Rattus norvegicus) (7)

2a	1ev9A02	A:82-190
2b	1ev9C02	C:82-190
2c	1ev9D02	D:82-190

(no "Pfam Domain" information available for 1EV9)

Asymmetric Unit(hide GO term definitions)

Chain A,C,D (GSTA1_RAT | P00502)

molecular function
	GO:0008144	drug binding	Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
	GO:0043295	glutathione binding	Interacting selectively and non-covalently with glutathione; a tripeptide composed of the three amino acids cysteine, glutamic acid and glycine.
	GO:0004364	glutathione transferase activity	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0007568	aging	A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0042493	response to drug	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
	GO:0031667	response to nutrient levels	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
	GO:0042178	xenobiotic catabolic process	The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005640	nuclear outer membrane	The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	Cis Peptide Bonds
		Val A:55 - Pro A:56	[ RasMol ]
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		Val D:55 - Pro D:56	[ RasMol ]

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	GSTA1_RAT \| P00502	:	1ev4

1ev4	1EV4 IS RAT GLUTATHIONE S-TRANSFERASE A1-1 MUTANT W21F/ F220Y WITH GSO3 BOUND

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

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