1EQZ | PD0137 - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym.Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE AT 2.5 A RESOLUTION

Authors :   B. L. Hanson, J. M. Harp, D. E. Timm, G. J. Bunick

Date :   06 Apr 00 (Deposition) - 17 Apr 00 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym./Biol. Unit : A,B,C,D,E,F,G,H,I,J

Keywords :   Nucleosome, Nucleosome Core Particle, Histone, Microgravity Histone Octamer, Dna Palindrome, Dna Protein Complex, Chromatin, Chromosomal Protein, Histone Fold, Bent Dna, Structural Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. M. Harp, B. L. Hanson, D. E. Timm, G. J. Bunick
Asymmetries In The Nucleosome Core Particle At 2. 5 A Resolution.
Acta Crystallogr. , Sect. D V. 56 1513 2000
PubMed-ID: 11092917 | Reference-DOI: 10.1107/S0907444900011847
(for further references see the PDB file header)

Molecule 1 - 146 NUCLEOTIDES LONG DNA
	Chains	:	I, J
	Engineered	:	YES
	Other Details	:	ENDS MUTATED TO ECO RV COMPATIBLE BLUNT ENDS AND ECO RI LINKER ADDED AT ALU I SITE OF 5' HALF OF NATIVE NUCLEOSOME FRAGMENT
	Other Details - Source	:	146 BP DNA PALINDROME BASED ON 5' HALF OF NUCLEOSOME PHASING SEQUENCE OF ALPHA SATELLITE DNA FROM HUMAN X CHROMOSOME BAM H1 REPEAT
	Synthetic	:	YES

Molecule 2 - PROTEIN (HISTONE H2A)
	Chains	:	A, E
	Organelle	:	ERYTHROCYTE NUCLEUS
	Organism Common	:	CHICKEN
	Organism Scientific	:	GALLUS GALLUS
	Organism Taxid	:	9031
	Other Details	:	SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER
	Tissue	:	BLOOD

Molecule 3 - PROTEIN (HISTONE H2B)
	Chains	:	B, F
	Organelle	:	ERYTHROCYTE NUCLEUS
	Organism Common	:	CHICKEN
	Organism Scientific	:	GALLUS GALLUS
	Organism Taxid	:	9031
	Other Details	:	SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER
	Tissue	:	BLOOD

Molecule 4 - PROTEIN (HISTONE H3)
	Chains	:	C, G
	Organelle	:	ERYTHROCYTE NUCLEUS
	Organism Common	:	CHICKEN
	Organism Scientific	:	GALLUS GALLUS
	Organism Taxid	:	9031
	Other Details	:	SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER
	Tissue	:	BLOOD

Molecule 5 - PROTEIN (HISTONE H4)
	Chains	:	D, H
	Organelle	:	ERYTHROCYTE NUCLEUS
	Organism Common	:	CHICKEN
	Organism Scientific	:	GALLUS GALLUS
	Organism Taxid	:	9031
	Other Details	:	SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER
	Tissue	:	BLOOD

		1	2	3	4	5	6	7	8	9	10
Asymmetric/Biological Unit	:	A	B	C	D	E	F	G	H	I	J

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 25)

No.	Name	Count	Type	Full Name
1	CAC	1	Ligand/Ion	CACODYLATE ION
2	CL	2	Ligand/Ion	CHLORIDE ION
3	K	7	Ligand/Ion	POTASSIUM ION
4	MN	15	Ligand/Ion	MANGANESE (II) ION

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:44 , GLY A:46 , ALA A:47 , THR B:90 , SER B:91	BINDING SITE FOR RESIDUE CL A 449
02	AC2	SOFTWARE	GLY E:44 , GLY E:46 , ALA E:47 , THR F:90 , SER F:91	BINDING SITE FOR RESIDUE CL E 450
03	AC3	SOFTWARE	GLU A:64 , GLN B:47 , VAL B:48 , HIS B:49 , GLU G:73 , GLN G:76 , ASP G:77 , LEU H:22	BINDING SITE FOR RESIDUE CAC G 451
04	AC4	SOFTWARE	DA J:255 , DA J:256	BINDING SITE FOR RESIDUE K J 452
05	AC5	SOFTWARE	LYS A:124 , DG J:216	BINDING SITE FOR RESIDUE K J 453
06	AC6	SOFTWARE	DG J:217	BINDING SITE FOR RESIDUE K J 454
07	AC7	SOFTWARE	DG J:227	BINDING SITE FOR RESIDUE K J 455
08	AC8	SOFTWARE	DA J:228	BINDING SITE FOR RESIDUE K J 456
09	AC9	SOFTWARE	DA J:175	BINDING SITE FOR RESIDUE K J 457
10	BC1	SOFTWARE	DG I:97 , DG I:98	BINDING SITE FOR RESIDUE K I 458
11	BC2	SOFTWARE	DG J:280 , HOH J:500 , HOH J:507	BINDING SITE FOR RESIDUE MN J 459
12	BC3	SOFTWARE	DG I:134 , HOH I:505	BINDING SITE FOR RESIDUE MN I 460
13	BC4	SOFTWARE	HOH I:509	BINDING SITE FOR RESIDUE MN J 461
14	BC5	SOFTWARE	DT I:140 , HOH I:511 , DG J:246	BINDING SITE FOR RESIDUE MN J 462
15	BC6	SOFTWARE	DG I:121 , HOH I:513	BINDING SITE FOR RESIDUE MN I 463
16	BC7	SOFTWARE	DG I:70 , DG I:71	BINDING SITE FOR RESIDUE MN I 464
17	BC8	SOFTWARE	DG I:39 , DG I:40 , HOH I:514	BINDING SITE FOR RESIDUE MN I 465
18	BC9	SOFTWARE	DG I:137 , DG I:138 , HOH I:488	BINDING SITE FOR RESIDUE MN I 466
19	CC1	SOFTWARE	DG J:185 , DG J:186	BINDING SITE FOR RESIDUE MN J 467
20	CC2	SOFTWARE	DG J:267 , HOH J:503	BINDING SITE FOR RESIDUE MN J 468
21	CC3	SOFTWARE	DA J:147	BINDING SITE FOR RESIDUE MN J 469
22	CC4	SOFTWARE	DG I:100	BINDING SITE FOR RESIDUE MN I 470
23	CC5	SOFTWARE	DA I:1	BINDING SITE FOR RESIDUE MN I 471
24	CC6	SOFTWARE	DA I:17 , DG I:18	BINDING SITE FOR RESIDUE MN I 472
25	CC7	SOFTWARE	DA I:124 , DG I:125	BINDING SITE FOR RESIDUE MN I 473

(no "SS Bond" information available for 1EQZ)

Asymmetric/Biological Unit

No.	Residues
1	Ala C:29	-	Pro C:30

(no "SAP(SNP)/Variant" information available for 1EQZ)

Asymmetric/Biological Unit (4, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HISTONE_H4	PS00047	Histone H4 signature.	H4_CHICK	15-19	2	D:14-18 H:14-18
2	HISTONE_H2A	PS00046	Histone H2A signature.	H2A4_CHICK	22-28	2	A:21-27 E:21-27
3	HISTONE_H3_2	PS00959	Histone H3 signature 2.	H32_CHICK	67-75	2	C:66-74 G:66-74
4	HISTONE_H2B	PS00357	Histone H2B signature.	H2B1_CHICK	93-115	2	B:92-114 F:92-114
				H2B7_CHICK	93-115	2	B:92-114 F:92-114
				H2B5_CHICK	93-115	2	B:92-114 F:92-114

(no "Exon" information available for 1EQZ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:125
 aligned with H2A4_CHICK | P02263 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:125
                                    11        21        31        41        51        61        71        81        91       101       111       121     
           H2A4_CHICK     2 SGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHKA 126
               SCOP domains d1eqza_ A: Histone H2A                                                                                                        SCOP domains
               CATH domains 1eqzA00 A:1-125 Histone, subunit A                                                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhh...hhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhh..eee.........hhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------HISTONE-------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 1eqz A   1 SGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHKA 125
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain B from PDB  Type:PROTEIN  Length:108
 aligned with H2B1_CHICK | P0C1H3 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:108
                                    28        38        48        58        68        78        88        98       108       118        
           H2B1_CHICK    19 VTKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
               SCOP domains d1eqzb_ B: Histone H2B                                                                                       SCOP domains
               CATH domains 1eqzB00 B:18-125 Histone, subunit A                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................hhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------HISTONE_H2B            ----------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 1eqz B  18 VTKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125
                                    27        37        47        57        67        77        87        97       107       117

Chain B from PDB  Type:PROTEIN  Length:108
 aligned with H2B5_CHICK | P0C1H4 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:108
                                    28        38        48        58        68        78        88        98       108       118        
           H2B5_CHICK    19 VTKTQKKGDKKRRKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
               SCOP domains d1eqzb_ B: Histone H2B                                                                                       SCOP domains
               CATH domains 1eqzB00 B:18-125 Histone, subunit A                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................hhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------HISTONE_H2B            ----------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 1eqz B  18 VTKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125
                                    27        37        47        57        67        77        87        97       107       117

Chain B from PDB  Type:PROTEIN  Length:108
 aligned with H2B7_CHICK | P0C1H5 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:108
                                    28        38        48        58        68        78        88        98       108       118        
           H2B7_CHICK    19 VTKTQKKGDKKRKRARKESYSIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
               SCOP domains d1eqzb_ B: Histone H2B                                                                                       SCOP domains
               CATH domains 1eqzB00 B:18-125 Histone, subunit A                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................hhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------HISTONE_H2B            ----------- PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 1eqz B  18 VTKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125
                                    27        37        47        57        67        77        87        97       107       117

Chain C from PDB  Type:PROTEIN  Length:107
 aligned with H32_CHICK | P84229 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:107
                                    39        49        59        69        79        89        99       109       119       129       
            H32_CHICK    30 APATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
               SCOP domains d1eqzc_ C: Histone H3                                                                                       SCOP domains
               CATH domains 1eqzC00 C:29-135 Histone, subunit A                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------HISTONE_H------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1eqz C  29 APATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
                                    38        48        58        68        78        88        98       108       118       128

Chain D from PDB  Type:PROTEIN  Length:89
 aligned with H4_CHICK | P62801 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:89
                                    24        34        44        54        64        74        84        94         
             H4_CHICK    15 GAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
               SCOP domains d1eqzd_ D: Histone H4                                                                     SCOP domains
               CATH domains 1eqzD00 D:14-102 Histone, subunit A                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhh...ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhh..eee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE HISTO------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 1eqz D  14 GAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 102
                                    23        33        43        53        63        73        83        93

Chain E from PDB  Type:PROTEIN  Length:127
 aligned with H2A4_CHICK | P02263 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:127
                                    12        22        32        42        52        62        72        82        92       102       112       122       
           H2A4_CHICK     3 GRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHKAKAK 129
               SCOP domains d1eqze_ E: Histone H2A                                                                                                          SCOP domains
               CATH domains 1eqzE00 E:2-128 Histone, subunit A                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhh...hhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhh..eee.........hhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------HISTONE----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1eqz E   2 GRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHKAKAK 128
                                    11        21        31        41        51        61        71        81        91       101       111       121

Chain F from PDB  Type:PROTEIN  Length:107
 aligned with H2B1_CHICK | P0C1H3 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:107
                                    29        39        49        59        69        79        89        99       109       119       
           H2B1_CHICK    20 TKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
               SCOP domains d1eqzf_ F: Histone H2B                                                                                      SCOP domains
               CATH domains 1eqzF00 F:19-125 Histone, subunit A                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------HISTONE_H2B            ----------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1eqz F  19 TKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125
                                    28        38        48        58        68        78        88        98       108       118

Chain F from PDB  Type:PROTEIN  Length:107
 aligned with H2B5_CHICK | P0C1H4 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:107
                                    29        39        49        59        69        79        89        99       109       119       
           H2B5_CHICK    20 TKTQKKGDKKRRKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
               SCOP domains d1eqzf_ F: Histone H2B                                                                                      SCOP domains
               CATH domains 1eqzF00 F:19-125 Histone, subunit A                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------HISTONE_H2B            ----------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1eqz F  19 TKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125
                                    28        38        48        58        68        78        88        98       108       118

Chain F from PDB  Type:PROTEIN  Length:107
 aligned with H2B7_CHICK | P0C1H5 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:107
                                    29        39        49        59        69        79        89        99       109       119       
           H2B7_CHICK    20 TKTQKKGDKKRKRARKESYSIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
               SCOP domains d1eqzf_ F: Histone H2B                                                                                      SCOP domains
               CATH domains 1eqzF00 F:19-125 Histone, subunit A                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------HISTONE_H2B            ----------- PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1eqz F  19 TKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125
                                    28        38        48        58        68        78        88        98       108       118

Chain G from PDB  Type:PROTEIN  Length:120
 aligned with H32_CHICK | P84229 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:120
                                    26        36        46        56        66        76        86        96       106       116       126       136
            H32_CHICK    17 PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
               SCOP domains d1eqzg_ G: Histone H3                                                                                                    SCOP domains
               CATH domains 1eqzG00 G:16-135 Histone, subunit A                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............................hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------HISTONE_H------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1eqz G  16 PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
                                    25        35        45        55        65        75        85        95       105       115       125       135

Chain H from PDB  Type:PROTEIN  Length:95
 aligned with H4_CHICK | P62801 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:95
                                    18        28        38        48        58        68        78        88        98     
             H4_CHICK     9 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
               SCOP domains d1eqzh_ H: Histone H4                                                                           SCOP domains
               CATH domains 1eqzH00 H:8-102 Histone, subunit A                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhhhhhhhhh...ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhh..eee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------HISTO------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 1eqz H   8 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 102
                                    17        27        37        47        57        67        77        87        97

Chain I from PDB  Type:DNA  Length:146
                                                                                                                                                                                  
                 1eqz I   1 ATCAATATCCACCTGCAGATTCTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCGGAATTCCGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGAATCTGCAGGTGGATATTGAT 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain J from PDB  Type:DNA  Length:146
                                                                                                                                                                                  
                 1eqz J 147 ATCAATATCCACCTGCAGATTCTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCGGAATTCCGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGAATCTGCAGGTGGATATTGAT 292
                                   156       166       176       186       196       206       216       226       236       246       256       266       276       286

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Histone, subunit A (62)

Homologous Superfamily: Histone, subunit A (62)

[unclassified] (10)

1a	1eqzC00	C:29-135
1b	1eqzF00	F:19-125
1c	1eqzB00	B:18-125
1d	1eqzA00	A:1-125
1e	1eqzE00	E:2-128
1f	1eqzH00	H:8-102
1g	1eqzD00	D:14-102
1h	1eqzG00	G:16-135

(no "Pfam Domain" information available for 1EQZ)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,E (H2A4_CHICK | P02263)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
biological process
	GO:0006342	chromatin silencing	Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin.
cellular component
	GO:0005694	chromosome	A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
	GO:0000790	nuclear chromatin	The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
	GO:0000786	nucleosome	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B,F (H2B7_CHICK | P0C1H5)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
biological process
	GO:0006334	nucleosome assembly	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
cellular component
	GO:0035267	NuA4 histone acetyltransferase complex	A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60).
	GO:0005694	chromosome	A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
	GO:0005811	lipid droplet	An intracellular non-membrane-bounded organelle comprising a matrix of coalesced lipids surrounded by a phospholipid monolayer. May include associated proteins.
	GO:0000788	nuclear nucleosome	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA in the nucleus into higher order structures.
	GO:0000786	nucleosome	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B,F (H2B5_CHICK | P0C1H4)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
biological process
	GO:0006334	nucleosome assembly	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
cellular component
	GO:0005694	chromosome	A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
	GO:0000788	nuclear nucleosome	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA in the nucleus into higher order structures.
	GO:0000786	nucleosome	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B,F (H2B1_CHICK | P0C1H3)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
biological process
	GO:0042742	defense response to bacterium	Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
	GO:0006334	nucleosome assembly	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
cellular component
	GO:0005694	chromosome	A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
	GO:0000788	nuclear nucleosome	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA in the nucleus into higher order structures.
	GO:0000786	nucleosome	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain C,G (H32_CHICK | P84229)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0042393	histone binding	Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
biological process
	GO:0006334	nucleosome assembly	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
cellular component
	GO:0005694	chromosome	A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0000786	nucleosome	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain D,H (H4_CHICK | P62801)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0042393	histone binding	Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
	GO:0019904	protein domain specific binding	Interacting selectively and non-covalently with a specific domain of a protein.
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
biological process
	GO:0006335	DNA replication-dependent nucleosome assembly	The formation of nucleosomes on newly replicated DNA, coupled to strand elongation.
	GO:0006336	DNA replication-independent nucleosome assembly	The formation of nucleosomes outside the context of DNA replication.
	GO:0006352	DNA-templated transcription, initiation	Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
	GO:0045653	negative regulation of megakaryocyte differentiation	Any process that stops, prevents, or reduces the frequency, rate or extent of megakaryocyte differentiation.
	GO:0006334	nucleosome assembly	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
	GO:0051290	protein heterotetramerization	The formation of a protein heterotetramer, a macromolecular structure consisting of four noncovalently associated subunits, of which not all are identical.
cellular component
	GO:0005694	chromosome	A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0000228	nuclear chromosome	A chromosome that encodes the nuclear genome and is found in the nucleus of a eukaryotic cell during the cell cycle phases when the nucleus is intact.
	GO:0000784	nuclear chromosome, telomeric region	The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0000786	nucleosome	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0043234	protein complex	A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Ala C:29 - Pro C:30	[ RasMol ]

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	1eqz
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	H2A4_CHICK \| P02263
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	H32_CHICK \| P84229
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	H4_CHICK \| P62801
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	H2A4_CHICK \| P02263
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UniProtKB/Swiss-Prot
	H2A4_CHICK \| P02263	:	1hio 1hq3 1tzy 2aro 2hio 2xql 3c9k
	H2B1_CHICK \| P0C1H3	:	1hio 1hq3 1tzy 2aro 2hio
	H2B5_CHICK \| P0C1H4	:	1hio 1hq3 1tzy 2aro 2hio 2xql
	H2B7_CHICK \| P0C1H5	:	1hio 1hq3 1tzy 2aro 2hio 3c9k
	H32_CHICK \| P84229	:	1hio 1hq3 1kx4 1kx5 1tzy 2aro 2hio 3c9k
	H4_CHICK \| P62801	:	1hio 1hq3 1kx4 1kx5 1m18 1m19 1m1a 1s32 1tzy 2aro 2hio 3c9k

(no "Related Entries Specified in the PDB File" available for 1EQZ)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 25)

Sites (25, 25)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (4, 8)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (4, 8)

CATH Domains (1, 8)

Pfam Domains (0, 0)

Gene Ontology (25, 58)

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Related Entries Specified in the PDB File