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(-) Description

Title :  CRYSTAL STRUCTURE OF URTICA DIOICA AGGLUTININ ISOLECTIN VI
 
Authors :  K. Harata, M. Muraki
Date :  20 Feb 00  (Deposition) - 05 Apr 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Two Homologous Hevein-Like Domains, Plant Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Harata, M. Muraki
Crystal Structures Of Urtica Dioica Agglutinin And Its Complex With Tri-N-Acetylchitotriose.
J. Mol. Biol. V. 297 673 2000
PubMed-ID: 10731420  |  Reference-DOI: 10.1006/JMBI.2000.3594
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - AGGLUTININ ISOLECTIN VI
    Chains: A
    Organism Common: GREAT NETTLE
    Organism Scientific: URTICA DIOICA
    Organism Taxid: 3501

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1PCA1Mod. Amino AcidPYROGLUTAMIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 1EHD)

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:3 -A:18
2A:12 -A:24
3A:17 -A:31
4A:35 -A:39
5A:49 -A:64
6A:58 -A:70
7A:63 -A:77
8A:82 -A:86

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1EHD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1EHD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1EHD)

(-) Exons   (0, 0)

(no "Exon" information available for 1EHD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:89
 aligned with Q9S7B3_URTDI | Q9S7B3 from UniProtKB/TrEMBL  Length:112

    Alignment length:89
                                    33        43        53        63        73        83        93       103         
         Q9S7B3_URTDI    24 QRCGSQGGGGTCPGLRCCSIWGWCGDSEPYCGRTCENKCWSGERSDHRCGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGGNCQYRCSSS 112
               SCOP domains d1ehda1 A:1-45 Isolectin VI                  d1ehda2 A:46-89 Isolectin VI                 SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh...hhhhheee....ee.hhhhhh..eee.hhhhh......hhhhh........eee....ee.hhhhhh...eee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 1ehd A   1 xRCGSQGGGATCPGLRCCSIWGWCGDSEPYCGRTCENKCWSGERSDHRCGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGGKCQYRCSSS  89
                            |       10        20        30        40        50        60        70        80         
                            |                                                                                        
                            1-PCA
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 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1EHD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1EHD)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9S7B3_URTDI | Q9S7B3)
molecular function
    GO:0008061    chitin binding    Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9S7B3_URTDI | Q9S7B3: 1ehh

(-) Related Entries Specified in the PDB File

1ehh URTICA DIOICA AGGLUTININ IN COMPLEX WITH TRI-N- ACETYLCHITOTRIOSE