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(-) Description

Title :  GLUTATHIONE TRANSFERASE FROM HOMO SAPIENS
 
Authors :  P. Board, M. Coggan, G. Chelvanayagam, S. Easteal, L. S. Jermiin, G. K. Schulte, D. E. Danley, L. R. Hoth, M. C. Griffor, A. V. Kamath, M. H. Rosner, B. A. Chrunyk, D. E. Perregaux, C. A. Gabel, K. F. Geoghegan, J. Pandit
Date :  01 Feb 00  (Deposition) - 11 Aug 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Gst, Glutathione Conjugating, Putative Oxidoreductase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. G. Board, M. Coggan, G. Chelvanayagam, S. Easteal, L. S. Jermiin, G. K. Schulte, D. E. Danley, L. R. Hoth, M. C. Griffor, A. V. Kamath, M. H. Rosner, B. A. Chrunyk, D. E. Perregaux, C. A. Gabel, K. F. Geoghegan, J. Pandit
Identification, Characterization, And Crystal Structure Of The Omega Class Glutathione Transferases.
J. Biol. Chem. V. 275 24798 2000
PubMed-ID: 10783391  |  Reference-DOI: 10.1074/JBC.M001706200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLUTATHIONE-S-TRANSFERASE
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Expression System VectorPGEX2T
    Expression System Vector TypePLASMID
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1GSH1Ligand/IonGLUTATHIONE
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1GSH2Ligand/IonGLUTATHIONE
2SO44Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:39 , HIS A:49 , VAL A:51 , HOH A:1009BINDING SITE FOR RESIDUE SO4 A 901
2AC2SOFTWAREGLU A:21 , GLY A:22 , SER A:78 , GLN A:79 , HOH A:1021 , HOH A:1137BINDING SITE FOR RESIDUE SO4 A 902
3AC3SOFTWARECYS A:32 , PHE A:34 , LEU A:56 , LYS A:59 , LEU A:71 , VAL A:72 , PRO A:73 , GLU A:85 , SER A:86 , HOH A:1002 , HOH A:1030 , HOH A:1043BINDING SITE FOR RESIDUE GSH A 999

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1EEM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Val A:72 -Pro A:73

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (5, 5)

Asymmetric Unit (5, 5)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_061231C32YGSTO1_HUMANPolymorphism45529437AC32Y
2UniProtVAR_029269S86CGSTO1_HUMANPolymorphism11509436AS86C
3UniProtVAR_016811A140DGSTO1_HUMANPolymorphism4925AA140D
4UniProtVAR_024484E208KGSTO1_HUMANPolymorphism11509438AE208K
5UniProtVAR_026583A236VGSTO1_HUMANPolymorphism11509439AA236V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (5, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_061231C32YGSTO1_HUMANPolymorphism45529437AC32Y
2UniProtVAR_029269S86CGSTO1_HUMANPolymorphism11509436AS86C
3UniProtVAR_016811A140DGSTO1_HUMANPolymorphism4925AA140D
4UniProtVAR_024484E208KGSTO1_HUMANPolymorphism11509438AE208K
5UniProtVAR_026583A236VGSTO1_HUMANPolymorphism11509439AA236V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 2)

Asymmetric Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GST_NTERPS50404 Soluble glutathione S-transferase N-terminal domain profile.GSTO1_HUMAN22-101  1A:22-101
2GST_CTERPS50405 Soluble glutathione S-transferase C-terminal domain profile.GSTO1_HUMAN106-230  1A:106-230
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GST_NTERPS50404 Soluble glutathione S-transferase N-terminal domain profile.GSTO1_HUMAN22-101  2A:22-101
2GST_CTERPS50405 Soluble glutathione S-transferase C-terminal domain profile.GSTO1_HUMAN106-230  2A:106-230

(-) Exons   (6, 6)

Asymmetric Unit (6, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.4aENST000003697134aENSE00001833010chr10:106014493-106014720228GSTO1_HUMAN1-12121A:5-128
1.5bENST000003697135bENSE00001776578chr10:106014921-106015029109GSTO1_HUMAN12-48371A:12-4837
1.6ENST000003697136ENSE00000987654chr10:106019334-106019556223GSTO1_HUMAN48-122751A:48-12275
1.7ENST000003697137ENSE00000987655chr10:106022737-10602283599GSTO1_HUMAN123-155331A:123-15533
1.8ENST000003697138ENSE00000987656chr10:106025842-106025948107GSTO1_HUMAN156-191361A:156-19136
1.9dENST000003697139dENSE00001881019chr10:106027010-106027215206GSTO1_HUMAN191-241511A:191-24151

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:237
 aligned with GSTO1_HUMAN | P78417 from UniProtKB/Swiss-Prot  Length:241

    Alignment length:237
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       
          GSTO1_HUMAN     5 SARSLGKGSAPPGPVPEGSIRIYSMRFCPFAERTRLVLKAKGIRHEVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMILELFSKVPSLVGSFIRSQNKEDYAGLKEEFRKEFTKLEEVLTNKKTTFFGGNSISMIDYLIWPWFERLEAMKLNECVDHTPKLKLWMAAMKEDPTVSALLTSEKDWQGFLELYLQNSPEACDYGL 241
               SCOP domains d1eema2 A:5-102 Class omega GST                                                                   d1eema1 A:103-241 Class omega GST                                                                                                           SCOP domains
               CATH domains 1eemA01 A:5-102,A:218-241 Glutaredoxin                                                            1eemA02 A:103-217  [code=1.20.1050.10, no name defined]                                                            1eemA01 Glutaredoxin     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeeee...hhhhhhhhhhhhhh...eeeee......hhhhhhh.......eeee....eeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh...hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------Y-----------------------------------------------------C-----------------------------------------------------D-------------------------------------------------------------------K---------------------------V----- SAPs(SNPs)
                    PROSITE -----------------GST_NTER  PDB: A:22-101 UniProt: 22-101                                         ----GST_CTER  PDB: A:106-230 UniProt: 106-230                                                                                    ----------- PROSITE
           Transcript 1 (1) 1.4a    -----------------------------------Exon 1.6  PDB: A:48-122 UniProt: 48-122                                    Exon 1.7  PDB: A:123-155         Exon 1.8  PDB: A:156-191            -------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------Exon 1.5b  PDB: A:12-48              ----------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9d  PDB: A:191-241 UniProt: 191-241          Transcript 1 (2)
                 1eem A   5 SARSLGKGSAPPGPVPEGSIRIYSMRFCPFAERTRLVLKAKGIRHEVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMILELFSKVPSLVGSFIRSQNKEDYAGLKEEFRKEFTKLEEVLTNKKTTFFGGNSISMIDYLIWPWFERLEAMKLNECVDHTPKLKLWMAAMKEDPTVSALLTSEKDWQGFLELYLQNSPEACDYGL 241
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit

(-) CATH Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1EEM)

(-) Gene Ontology  (29, 29)

Asymmetric Unit(hide GO term definitions)
Chain A   (GSTO1_HUMAN | P78417)
molecular function
    GO:0045174    glutathione dehydrogenase (ascorbate) activity    Catalysis of the reaction: dehydroascorbate + 2 glutathione = L-ascorbate + glutathione disulfide.
    GO:0004364    glutathione transferase activity    Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group.
    GO:0050610    methylarsonate reductase activity    Catalysis of the reaction: 2 glutathione + H(+) + methylarsonate = glutathione disulfide + H(2)O + methylarsonous acid.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0019853    L-ascorbic acid biosynthetic process    The chemical reactions and pathways resulting in the formation of L-ascorbic acid; L-ascorbic acid ionizes to give L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, which is required as a cofactor in the oxidation of prolyl residues to hydroxyprolyl, and other reactions.
    GO:0019852    L-ascorbic acid metabolic process    The chemical reactions and pathways involving L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species.
    GO:0098869    cellular oxidant detoxification    Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
    GO:0071243    cellular response to arsenic-containing substance    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides.
    GO:1901687    glutathione derivative biosynthetic process    The chemical reactions and pathways resulting in the formation of glutathione derivative.
    GO:0006749    glutathione metabolic process    The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0032259    methylation    The process in which a methyl group is covalently attached to a molecule.
    GO:0060315    negative regulation of ryanodine-sensitive calcium-release channel activity    Any process that decreases the activity of a ryanodine-sensitive calcium-release channel. The ryanodine-sensitive calcium-release channel catalyzes the transmembrane transfer of a calcium ion by a channel that opens when a ryanodine class ligand has been bound by the channel complex or one of its constituent parts.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0060316    positive regulation of ryanodine-sensitive calcium-release channel activity    Any process that increases the activity of a ryanodine-sensitive calcium-release channel. The ryanodine-sensitive calcium-release channel catalyzes the transmembrane transfer of a calcium ion by a channel that opens when a ryanodine class ligand has been bound by the channel complex or one of its constituent parts.
    GO:0014810    positive regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion    Any process that activates, maintains or increases the frequency, rate or extent of skeletal muscle contraction via the regulation of the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol. The sarcoplasmic reticulum is the endoplasmic reticulum of striated muscle, specialised for the sequestration of calcium ions that are released upon receipt of a signal relayed by the T tubules from the neuromuscular junction.
    GO:0010881    regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion    Any process that modulates the frequency, rate or extent of cardiac muscle contraction via the regulation of the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol. The sarcoplasmic reticulum is the endoplasmic reticulum of striated muscle, specialised for the sequestration of calcium ions that are released upon receipt of a signal relayed by the T tubules from the neuromuscular junction.
    GO:0010880    regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum    Any process that modulates the rate, frequency or extent of release of sequestered calcium ion into cytosol by the sarcoplasmic reticulum, the process in which the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol occurs via calcium release channels.
    GO:0042178    xenobiotic catabolic process    The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide.
cellular component
    GO:0030424    axon    The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
    GO:0005604    basement membrane    A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers.
    GO:0044297    cell body    The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0031965    nuclear membrane    Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GSTO1_HUMAN | P784173lfl 3vln 4is0 4yqm 4yqu 4yqv

(-) Related Entries Specified in the PDB File

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