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(-) Description

Title :  BACILLUS STEAROTHERMOPHILUS YHFR
 
Authors :  D. J. Rigden, M. J. Jedrzejas
Date :  24 Jul 01  (Deposition) - 11 Feb 02  (Release) - 07 Sep 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Broad Specificity Phosphatase; Dpgm Homolog (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. J. Rigden, L. V. Mello, P. Setlow, M. J. Jedrzejas
Structure And Mechanism Of Action Of A Cofactor-Dependent Phosphoglycerate Mutase Homolog From Bacillus Stearothermophilus With Broad Specificity Phosphatase Activity.
J. Mol. Biol. V. 315 1129 2002
PubMed-ID: 11827481  |  Reference-DOI: 10.1006/JMBI.2001.5290
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHOSPHATASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PS3297
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: BACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422
    Synonym: YHFR

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2SO45Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:34 , MET A:100 , ASP A:101 , PRO A:102 , ILE A:103 , ALA A:104 , HOH A:2033BINDING SITE FOR RESIDUE SO4 A 300
2AC2SOFTWAREALA A:2 , TRP A:24 , ARG A:82 , GLY A:143 , SO4 A:302BINDING SITE FOR RESIDUE SO4 A 301
3AC3SOFTWARETHR A:3 , THR A:4 , GLY A:143 , GLU A:144 , SO4 A:301BINDING SITE FOR RESIDUE SO4 A 302
4AC4SOFTWARETYR A:6 , ARG A:43 , VAL A:47BINDING SITE FOR RESIDUE SO4 A 303
5AC5SOFTWAREASP A:88 , PRO A:117 , GLN A:118 , ARG A:119 , GLY A:120 , HOH A:2018BINDING SITE FOR RESIDUE SO4 A 304
6AC6SOFTWAREARG A:9 , HIS A:10 , ASN A:16 , GLN A:22 , ARG A:59 , GLU A:83 , GOL A:402BINDING SITE FOR RESIDUE GOL A 400
7AC7SOFTWAREGLN A:127 , ALA A:160 , THR A:165 , PRO A:166 , LEU A:167 , ASP A:168BINDING SITE FOR RESIDUE GOL A 401
8AC8SOFTWAREARG A:20 , MET A:21 , GLN A:22 , GLY A:23 , GLU A:83 , GOL A:400BINDING SITE FOR RESIDUE GOL A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1EBB)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro A:173 -Pro A:174

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1EBB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1EBB)

(-) Exons   (0, 0)

(no "Exon" information available for 1EBB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:202
 aligned with Q9ALU0_GEOSE | Q9ALU0 from UniProtKB/TrEMBL  Length:195

    Alignment length:202
                                  1                                                                                                                                                                                               195 
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194| 
         Q9ALU0_GEOSE     - ------TRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVELAAIYTSTSGRALETAEIVRGGRLIPIYQDERLREIHLGDWEGKTHDEIRQMDPIAFDHFWNAPHLYAPQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAFKDTPLDHLWSPPYMYGTSVTIIEVDGGTFHVAVEGDVSHI-   -
               SCOP domains d1ebba_ A: Broad specificity phosphatase PhoE (YhfR)                                                                                                                                                       SCOP domains
               CATH domains 1ebbA00 A:2-203 Phosphoglycerate mutase-like                                                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhhh...........hhhhhhhhhhhhhhh......eeee..hhhhhhhhhhhhh.....eee.hhhh...hhhhh..hhhhhhh.hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh.hhhhh..........eeeeeee..eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ebb A   2 ATTLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVELAAIYTSTSGRALETAEIVRGGRLIPIYQDERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAFKDTPLDHLWSPPYMYGTSVTIIEVDGGTFHVAVEGDVSHIE 203
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1EBB)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1EBB)

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 Related Entries

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UniProtKB/TrEMBL
        Q9ALU0_GEOSE | Q9ALU0: 1h2e 1h2f

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