1E5L - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Title :   APO SACCHAROPINE REDUCTASE FROM MAGNAPORTHE GRISEA

Authors :   E. Johansson, J. J. Steffens, Y. Lindqvist, G. Schneider

Date :   27 Jul 00 (Deposition) - 27 Nov 00 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym./Biol. Unit : A,B

Keywords :   Oxidoreductase, Saccharopine Reductase, Lysine Biosynthesis, Alpha- Aminoadipate Pathway (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Johansson, J. J. Steffens, Y. Lindqvist, G. Schneider
Crystal Structure Of Saccharopine Reductase From Magnaporthe Grisea, An Enzyme Of The Alpha- Aminoadipate Pathway Of Lysine Biosynthesis
Structure V. 8 1037 2000
PubMed-ID: 11080625 | Reference-DOI: 10.1016/S0969-2126(00)00512-8
(for further references see the PDB file header)

Molecule 1 - SACCHAROPINE REDUCTASE
	Chains	:	A, B
	EC Number	:	1.5.1.10
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Cellular Location	:	CYTOPLASM
	Expression System Plasmid	:	PDB45
	Expression System Strain	:	FM5/PDB45
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	LYS3
	Organism Common	:	RICE BLAST FUNGUS
	Organism Scientific	:	MAGNAPORTHE GRISEA
	Organism Taxid	:	148305
	Synonym	:	SACCHAROPNE DEHYDROGENASE (GLUTAMATE FORMING), ALPHA-AMINOADIPATE-DELTA-SEMIALDEHYDE-GLUTAMATE REDUCTASE

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1E5L)

(no "Site" information available for 1E5L)

(no "SS Bond" information available for 1E5L)

Asymmetric/Biological Unit

No.	Residues
1	Asp A:126	-	Pro A:127
2	Asp B:126	-	Pro B:127

Asymmetric/Biological Unit (2, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LYS9_MAGO7_001 *	E	140	G	LYS9_MAGO7	---	---	A/B	E	140	G
2	UniProt	VAR_LYS9_MAGO7_002 *	L	398	F	LYS9_MAGO7	---	---	A/B	L	398	F
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 1E5L)

(no "Exon" information available for 1E5L)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:449
 aligned with LYS9_MAGO7 | Q9P4R4 from UniProtKB/Swiss-Prot  Length:450

    Alignment length:449
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441         
           LYS9_MAGO7     2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGLDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCGGLPAPESSDNPLGYKFSWSSRGVLLALRNAASFYKDGKVTNVAGPELMATAKPYFIYPGFAFVAYPNRDSTPYKERYQIPEADNIVRGTLRYQGFPQFIKVLVDIGFLSDEEQPFLKEAIPWKEATQKIVKASSASEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKITPRGNALDTLCATLEEKMQFEEGERDLVMLQHKFEIENKDGSRETRTSSLCEYGAPIGSGGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAPMNSKINDPLMKELKEKYGIECKEKVVA 450
               SCOP domains d1e5la1 A:2-124,A:392-450 Saccharopine reductase                                                                           d1e5la2 A:125-391 Saccharopine reductase                                                                                                                                                                                                                                   d1e5la1 A:2-124,A:392-450 Saccharopine reductase            SCOP domains
               CATH domains 1e5lA01 A:2-124,A:395-442 NAD(P)-binding Rossmann-like Domain                                                              1e5lA02 A:125-249,A:350-394,A:443-449 Dihydrodipicolinate Reductase; domain 2                                                1e5lA03 A:250-349 Domain 3, Saccharopine reductase                                                  1e5lA02 A:125-249,A:350-394,A:443-449        1e5lA01 A:2-124,A:395-442                       1e5lA02- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....hhhhhhhhhhhh..eeeeee.hhhhhhhhhh....eeeee....hhhhhhhhhhh..eeee..hhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhh..eee.......hhhhhhhhhhhhhhhhhh.eeeeeeeeeeeee.hhhh................hhhhh.eeeee..eeeeehhhhhhhhh..........eeeee.....hhhhhh......eeeeeeeee.hhhhhhhhhhhh........hhhhh..hhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh.......eeeeeeeeeeee.....eeeeeeeeeee.........hhhhhhhhhhhhhhhhhhhh......eee...hhhhhhhhhhhhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F---------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1e5l A   2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGLDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCGGLPAPESSDNPLGYKFSWSSRGVLLALRNAASFYKDGKVTNVAGPELMATAKPYFIYPGFAFVAYPNRDSTPYKERYQIPEADNIVRGTLRYQGFPQFIKVLVDIGFLSDEEQPFLKEAIPWKEATQKIVKASSASEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKITPRGNALDTLCATLEEKMQFEEGERDLVMLQHKFEIENKDGSRETRTSSLCEYGAPIGSGGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAPMNSKINDPLMKELKEKYGIECKEKVVA 450
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441

Chain B from PDB  Type:PROTEIN  Length:449
 aligned with LYS9_MAGO7 | Q9P4R4 from UniProtKB/Swiss-Prot  Length:450

    Alignment length:449
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441         
           LYS9_MAGO7     2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGLDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCGGLPAPESSDNPLGYKFSWSSRGVLLALRNAASFYKDGKVTNVAGPELMATAKPYFIYPGFAFVAYPNRDSTPYKERYQIPEADNIVRGTLRYQGFPQFIKVLVDIGFLSDEEQPFLKEAIPWKEATQKIVKASSASEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKITPRGNALDTLCATLEEKMQFEEGERDLVMLQHKFEIENKDGSRETRTSSLCEYGAPIGSGGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAPMNSKINDPLMKELKEKYGIECKEKVVA 450
               SCOP domains d1e5lb1 B:2-124,B:392-450 Saccharopine reductase                                                                           d1e5lb2 B:125-391 Saccharopine reductase                                                                                                                                                                                                                                   d1e5lb1 B:2-124,B:392-450 Saccharopine reductase            SCOP domains
               CATH domains 1e5lB01 B:2-124,B:395-442 NAD(P)-binding Rossmann-like Domain                                                              1e5lB02 B:125-249,B:350-394,B:443-449 Dihydrodipicolinate Reductase; domain 2                                                1e5lB03 B:250-349 Domain 3, Saccharopine reductase                                                  1e5lB02 B:125-249,B:350-394,B:443-449        1e5lB01 B:2-124,B:395-442                       1e5lB02- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.hhhhhhhhhhhhhhh..eeeee..hhhhhhhh...............hhhhhhhhhh...eeee.......hhhhhhhhhh..eeee....hhhhhhhhhhhhhh..eee.......hhhhhhhhhhhhhhhhh..eeeeeeeeeeeee.hhhh..........hhhhhhhh....eeeee..eeeeehhhhhhhhh..........eeeee.....hhhhhh......eeeeeeeee.hhhhhhhhhhhh.......hhhhh...hhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh.......eeeeeeeeeeee.....eeeeeeeeeee.........hhhhhhhhhhhhhhhhhhhh......eee...hhhhhhhhhhhhhhhhh...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F---------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1e5l B   2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGLDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCGGLPAPESSDNPLGYKFSWSSRGVLLALRNAASFYKDGKVTNVAGPELMATAKPYFIYPGFAFVAYPNRDSTPYKERYQIPEADNIVRGTLRYQGFPQFIKVLVDIGFLSDEEQPFLKEAIPWKEATQKIVKASSASEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKITPRGNALDTLCATLEEKMQFEEGERDLVMLQHKFEIENKDGSRETRTSSLCEYGAPIGSGGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAPMNSKINDPLMKELKEKYGIECKEKVVA 450
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Dihydrodipicolinate Reductase; domain 2 (182)

Homologous Superfamily: Dihydrodipicolinate Reductase; domain 2 (178)

Rice blast fungus (Magnaporthe grisea) (2)

1a	1e5lA02	A:125-249,A:350-394,A:443-449
1b	1e5lB02	B:125-249,B:350-394,B:443-449

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Rice blast fungus (Magnaporthe grisea) (2)

2a	1e5lA01	A:2-124,A:395-442
2b	1e5lB01	B:2-124,B:395-442

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Domain 3, Saccharopine reductase (4)

Homologous Superfamily: Domain 3, Saccharopine reductase (4)

Rice blast fungus (Magnaporthe grisea) (2)

3a	1e5lA03	A:250-349
3b	1e5lB03	B:250-349

(no "Pfam Domain" information available for 1E5L)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (LYS9_MAGO7 | Q9P4R4)

molecular function
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0004755	saccharopine dehydrogenase (NADP+, L-glutamate-forming) activity	Catalysis of the reaction: L-saccharopine + H(2)O + NADP(+) = L-allysine + L-glutamate + H(+) + NADPH.
biological process
	GO:0008652	cellular amino acid biosynthetic process	The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
	GO:0009085	lysine biosynthetic process	The chemical reactions and pathways resulting in the formation of lysine, 2,6-diaminohexanoic acid.
	GO:0019878	lysine biosynthetic process via aminoadipic acid	The chemical reactions and pathways resulting in the formation of lysine by the aminoadipic pathway.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005575	cellular_component	The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Asp A:126 - Pro A:127	[ RasMol ]
		Asp B:126 - Pro B:127	[ RasMol ]

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Description

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Ligands, Modified Residues, Ions (0, 0)

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SS Bonds (0, 0)

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