1E2F - JenaLib

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:42 , PRO A:43 , ARG A:45 , LEU A:57 , PHE A:72 , ARG A:76 , ARG A:97 , GLY A:102 , PHE A:105 , TYR A:151 , ANP A:302 , HOH A:2021 , HOH A:2078 , HOH A:2276 , HOH A:2277 , HOH A:2278 , HOH A:2279 , HOH A:2280 , HOH A:2281 , HOH A:2282 , HOH A:2292 , HOH A:2293	BINDING SITE FOR RESIDUE TMP A 301
2	AC2	SOFTWARE	ASP A:15 , ARG A:16 , ALA A:17 , GLY A:18 , LYS A:19 , SER A:20 , THR A:21 , ARG A:97 , ARG A:143 , LYS A:182 , SER A:183 , ILE A:184 , ARG A:192 , TMP A:301 , MG A:401 , HOH A:2276 , HOH A:2277 , HOH A:2278 , HOH A:2283 , HOH A:2285 , HOH A:2286 , HOH A:2288 , HOH A:2289 , HOH A:2290 , HOH A:2291 , HOH A:2292 , HOH A:2293 , HOH A:2294 , HOH A:2295 , HOH A:2296 , HOH A:2297	BINDING SITE FOR RESIDUE ANP A 302
3	AC3	SOFTWARE	ARG A:16 , ALA A:17 , GLY A:18 , LYS A:19 , SER A:20 , THR A:21 , ARG A:143 , LYS A:182 , SER A:183 , ILE A:184 , ARG A:192 , MG A:401 , HOH A:2277 , HOH A:2283 , HOH A:2284 , HOH A:2285 , HOH A:2286 , HOH A:2288 , HOH A:2289 , HOH A:2290 , HOH A:2291 , HOH A:2293 , HOH A:2294 , HOH A:2295 , HOH A:2296 , HOH A:2297	BINDING SITE FOR RESIDUE ADP A 303
4	AC4	SOFTWARE	SER A:20 , ANP A:302 , ADP A:303 , HOH A:2276 , HOH A:2277 , HOH A:2286 , HOH A:2293	BINDING SITE FOR RESIDUE MG A 401
5	AC5	SOFTWARE	HOH A:2067 , HOH A:2161 , HOH A:2163	BINDING SITE FOR RESIDUE MG A 402

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (5, 5)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:210
 aligned with KTHY_HUMAN | P23919 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:210
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212
           KTHY_HUMAN     3 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIRTATEKPLGELWK 212
               SCOP domains d1e2fa_ A: Thymidylate kinase                                                                                                                                                                                      SCOP domains
               CATH domains 1e2fA00 A:3-212 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeee.....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhh....hhhhhhhhhh......eeeeee.hhhhhh...........hhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------THYMIDYLATE_K---------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: A:3-44 UniProt: 1-44      -----------------------------------Exon 1.7  PDB: A:80-110        Exon 1.8  PDB: A:111-176 UniProt: 111-176                         Exon 1.9f  PDB: A:177-212            Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------Exon 1.2b  PDB: A:44-80              ------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (2)
                 1e2f A   3 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATATEKPLGELWK 212
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (26, 26)

Asymmetric Unit(hide GO term definitions)

Chain A (KTHY_HUMAN | P23919)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0050145	nucleoside phosphate kinase activity	Catalysis of the reaction: ATP + nucleoside phosphate = ADP + nucleoside diphosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0004798	thymidylate kinase activity	Catalysis of the reaction: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0009041	uridylate kinase activity	Catalysis of the reaction: ATP + (d)UMP = ADP + (d)UDP.
biological process
	GO:0007049	cell cycle	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
	GO:0008283	cell proliferation	The multiplication or reproduction of cells, resulting in the expansion of a cell population.
	GO:0071363	cellular response to growth factor stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus.
	GO:0006233	dTDP biosynthetic process	The chemical reactions and pathways resulting in the formation of dTDP, deoxyribosylthymine diphosphate (2'-deoxyribosylthymine5'-diphosphate).
	GO:0006235	dTTP biosynthetic process	The chemical reactions and pathways resulting in the formation of dTTP, deoxyribosylthymine triphosphate.
	GO:0006227	dUDP biosynthetic process	The chemical reactions and pathways resulting in the formation of dUDP, deoxyuridine diphosphate (2'-deoxy-5'-uridylyl phosphate).
	GO:0045445	myoblast differentiation	The process in which a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into striated muscle fibers.
	GO:0015949	nucleobase-containing small molecule interconversion	The chemical reactions and pathways by which a nucleobase, nucleoside or nucleotide small molecule is synthesized from another nucleobase, nucleoside or nucleotide small molecule.
	GO:0046940	nucleoside monophosphate phosphorylation	The process of introducing one or more phosphate groups into a nucleoside monophosphate to produce a polyphosphorylated nucleoside.
	GO:0009165	nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).
	GO:0046939	nucleotide phosphorylation	The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0046686	response to cadmium ion	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
	GO:0043627	response to estrogen	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005758	mitochondrial intermembrane space	The region between the inner and outer lipid bilayers of the mitochondrial envelope.
	GO:0005759	mitochondrial matrix	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	1e2f
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	2.7.4.9
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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

1e2d	HUMAN THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE MONOPHOSPHATE, ADENOSINE DIPHOSPHATE AND A MAGNESIUM-ION
1e2e	HUMAN THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE MONOPHOSPHATE, ADENOSINE DIPHOSPHATE,A MAGNESIUM-ION AND ALF3
1e2g	HUMAN THYMIDYLATE KINASE COMPLEXED WITH ADP, TDP AND A MAGNESIUM-ION
1e2q	HUMAN THYMIDYLATE KINASE COMPLEXED WITH TP5A AND A MAGNESIUM-ION
1e98	WILD TYPE HUMAN THYMIDYLATE KINASE COMPLEXED WITH AZTMP AND ADP
1e99	HUMAN THYMIDYLATE KINASE COMPLEXED WITH AZTMP AND ADP
1e9a	HUMAN THYMIDYLATE KINASE COMPLEXED WITH THE BISUBSTRATE INHIBITOR AZTP5A
1e9b	HUMAN THYMIDYLATE KINASE COMPLEXED WITH AZTMP AND APPNP
1e9c	MUTANT HUMAN THYMIDYLATE KINASE COMPLEXED WITH TMP AND APPNP
1e9d	MUTANT HUMAN THYMIDYLATE KINASE (F105Y) COMPLEXED WITH AZTMP AND ADP
1e9e	MUTANT HUMAN THYMIDYLATE KINASE (F105Y) COMPLEXED WITH DTMP AND ADP
1e9f	MUTANT HUMAN THYMIDYLATE KINASE COMPLEXED WITH TMP AND ADP
1nmx	CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH FLTMPAND ADP
1nmy	CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH FLTMPAND APPNHP
1nmz	CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH NH2TMPAND APPNHP
1nn0	CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH DDTMPAND ADP
1nn1	CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH DDTMPAND APPNHP
1nn3	CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH D4TMP +ADP
1nn5	CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH D4TMP +APPNHP
2xx3	HUMAN THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE BUTENYL PHOSPHONATE MONOPHOSPHATE AND ADP

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 5)

Sites (5, 5)