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(-) Description

Title :  FBP28WW DOMAIN FROM MUS MUSCULUS
 
Authors :  M. J. Macias, V. Gervais, C. Civera, H. Oschkinat
Date :  30 Mar 00  (Deposition) - 20 Apr 00  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
Keywords :  Sh3 Domain, Ww Domain, Fbp28, Signal Transduction (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. J. Macias, V. Gervais, C. Civera, H. Oschkinat
Structural Analysis Of Ww Domains And Design Of A Ww Prototype
Nat. Struct. Biol. V. 7 375 2000
PubMed-ID: 10802733  |  Reference-DOI: 10.1038/75144

(-) Compounds

Molecule 1 - FORMIN BINDING PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentDOMAIN
    Organism CommonHOUSE MOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090

 Structural Features

(-) Chains, Units

  
NMR Structure (10x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1E0L)

(-) Sites  (0, 0)

(no "Site" information available for 1E0L)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1E0L)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1E0L)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1E0L)

(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1WW_DOMAIN_2PS50020 WW/rsp5/WWP domain profile.TCRG1_MOUSE131-164
431-464
534-563
  1-
A:2-35
-
2WW_DOMAIN_1PS01159 WW/rsp5/WWP domain signature.TCRG1_MOUSE437-462  1A:8-33

(-) Exons   (1, 1)

NMR Structure (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSMUST000000253751ENSMUSE00000246334chr18:42671141-4267123999TCRG1_MOUSE1-20200--
1.2ENSMUST000000253752ENSMUSE00000246318chr18:42679022-42679247226TCRG1_MOUSE20-95760--
1.3ENSMUST000000253753ENSMUSE00000142916chr18:42682568-42682720153TCRG1_MOUSE96-146510--
1.4ENSMUST000000253754ENSMUSE00000142910chr18:42683547-42684006460TCRG1_MOUSE147-3001540--
1.5ENSMUST000000253755ENSMUSE00000142917chr18:42690302-42690544243TCRG1_MOUSE300-381820--
1.6ENSMUST000000253756ENSMUSE00000142908chr18:42694739-4269480163TCRG1_MOUSE381-402220--
1.7ENSMUST000000253757ENSMUSE00000142915chr18:42695832-42696032201TCRG1_MOUSE402-469681A:1-3737
1.8ENSMUST000000253758ENSMUSE00000142909chr18:42696516-42696628113TCRG1_MOUSE469-506380--
1.9ENSMUST000000253759ENSMUSE00000142918chr18:42697622-4269771089TCRG1_MOUSE507-536300--
1.10ENSMUST0000002537510ENSMUSE00000142907chr18:42708051-42708211161TCRG1_MOUSE536-590550--
1.11ENSMUST0000002537511ENSMUSE00000142912chr18:42709492-4270954857TCRG1_MOUSE590-609200--
1.12ENSMUST0000002537512ENSMUSE00000142914chr18:42709696-4270976267TCRG1_MOUSE609-631230--
1.13ENSMUST0000002537513ENSMUSE00000246134chr18:42712146-42712281136TCRG1_MOUSE631-676460--
1.14ENSMUST0000002537514ENSMUSE00000246118chr18:42713062-4271315190TCRG1_MOUSE677-706300--
1.15ENSMUST0000002537515ENSMUSE00000246090chr18:42720588-42720706119TCRG1_MOUSE707-746400--
1.16ENSMUST0000002537516ENSMUSE00000246066chr18:42723737-42723887151TCRG1_MOUSE746-796510--
1.17ENSMUST0000002537517ENSMUSE00000246042chr18:42727525-42727689165TCRG1_MOUSE797-851550--
1.18ENSMUST0000002537518ENSMUSE00000246017chr18:42728082-42728264183TCRG1_MOUSE852-912610--
1.19ENSMUST0000002537519ENSMUSE00000245983chr18:42730669-42730848180TCRG1_MOUSE913-972600--
1.20ENSMUST0000002537520ENSMUSE00000245943chr18:42731478-4273156184TCRG1_MOUSE973-1000280--
1.21ENSMUST0000002537521ENSMUSE00000458574chr18:42732914-42733014101TCRG1_MOUSE1001-1034340--
1.22ENSMUST0000002537522ENSMUSE00000480281chr18:42734172-427354391268TCRG1_MOUSE1034-1100670--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:37
 aligned with TCRG1_MOUSE | Q8CGF7 from UniProtKB/Swiss-Prot  Length:1100

    Alignment length:37
                                   439       449       459       
          TCRG1_MOUSE   430 GATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK 466
               SCOP domains d1e0la_ A:                            SCOP domains
               CATH domains ------------------------------------- CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee...eeeeeee..eeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                PROSITE (1) -WW_DOMAIN_2  PDB: A:2-35          -- PROSITE (1)
                PROSITE (2) -------WW_DOMAIN_1  PDB: A:8-33  ---- PROSITE (2)
               Transcript 1 Exon 1.7  PDB: A:1-37 [INCOMPLETE]    Transcript 1
                 1e0l A   1 GATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK  37
                                    10        20        30       

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1E0L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1E0L)

(-) Gene Ontology  (10, 10)

NMR Structure(hide GO term definitions)
Chain A   (TCRG1_MOUSE | Q8CGF7)
molecular function
    GO:0001103    RNA polymerase II repressing transcription factor binding    Interacting selectively and non-covalently with an RNA polymerase II transcription repressing factor, a protein involved in negative regulation of transcription.
    GO:0001106    RNA polymerase II transcription corepressor activity    Interacting selectively and non-covalently with an RNA polymerase II repressing transcription factor and also with the RNA polymerase II basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind DNA, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery.
    GO:0070064    proline-rich region binding    Interacting selectively and non-covalently with a proline-rich region, i.e. a region that contains a high proportion of proline residues, in a protein.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TCRG1_MOUSE | Q8CGF72jup 2rly 2rm0 2ysi

(-) Related Entries Specified in the PDB File

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1e0m PROTOTYPE WW DOMAIN
1e0n YJQ8WW DOMAIN FROM SACCHAROMYCES CEREVISAE