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(-) Description

Title :  THE CRYSTAL STRUCTURE OF ZEAMATIN.
 
Authors :  M. A. Batalia, A. F. Monzingo, S. Ernst, W. Roberts, J. D. Robertus
Date :  14 Jan 00  (Deposition) - 02 Feb 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Beta Sandwich, Antifungal Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Batalia, A. F. Monzingo, S. Ernst, W. Roberts, J. D. Robertus
The Crystal Structure Of The Antifungal Protein Zeamatin, A Member Of The Thaumatin-Like, Pr-5 Protein Family.
Nat. Struct. Biol. V. 3 19 1996
PubMed-ID: 8548448  |  Reference-DOI: 10.1038/NSB0196-19
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ZEAMATIN
    Chains: A, B
    Organism Scientific: ZEA MAYS
    Organism Taxid: 4577

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1DU5)

(-) Sites  (0, 0)

(no "Site" information available for 1DU5)

(-) SS Bonds  (16, 16)

Asymmetric/Biological Unit
No.Residues
1A:9 -A:205
2A:51 -A:61
3A:66 -A:72
4A:118 -A:194
5A:124 -A:177
6A:132 -A:142
7A:146 -A:155
8A:156 -A:164
9B:9 -B:205
10B:51 -B:61
11B:66 -B:72
12B:118 -B:194
13B:124 -B:177
14B:132 -B:142
15B:146 -B:155
16B:156 -B:164

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Val A:18 -Pro A:19
2Ala A:78 -Pro A:79
3Val B:18 -Pro B:19
4Ala B:78 -Pro B:79

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1DU5)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THAUMATIN_1PS00316 Thaumatin family signature.ZEAM_MAIZE78-93
 		  2A:57-72
B:57-72

(-) Exons   (0, 0)

(no "Exon" information available for 1DU5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:206
 aligned with ZEAM_MAIZE | P33679 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:206
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221      
           ZEAM_MAIZE    22 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGSCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSRGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 227
               SCOP domains d1du5a_ A: Zeamatin                                                                                                                                                                                            SCOP domains
               CATH domains 1du5A00 A:1-206 Thaumatin                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....eeeeee...eeeee....eeeee.......eeeeee..eee.....eee....................eeeeeeee...eeeeeee........eeeee..........ee........hhh.ee..ee.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh........hhhhhheeee....eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------THAUMATIN_1     -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1du5 A   1 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGSCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSRGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200      


Chain B from PDB  Type:PROTEIN  Length:206
 aligned with ZEAM_MAIZE | P33679 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:206
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221      
           ZEAM_MAIZE    22 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGSCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSRGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 227
               SCOP domains d1du5b_ B: Zeamatin                                                                                                                                                                                            SCOP domains
               CATH domains 1du5B00 B:1-206 Thaumatin                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....eeeeee...eeeee....eeeee.......eeeeeeeeeee.....eeeee..................eeeee..hhh.eeeeeee........eeeee..........ee........hhh.ee..ee.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh........hhhhhheeee....eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------THAUMATIN_1     -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1du5 B   1 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGSCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSRGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DU5)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (ZEAM_MAIZE | P33679)
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0050832    defense response to fungus    Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
    GO:0031640    killing of cells of other organism    Any process in an organism that results in the killing of cells of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions.

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  Cis Peptide Bonds
    Ala A:78 - Pro A:79   [ RasMol ]  
    Ala B:78 - Pro B:79   [ RasMol ]  
    Val A:18 - Pro A:19   [ RasMol ]  
    Val B:18 - Pro B:19   [ RasMol ]  
 

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  1du5
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 Related Entries

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