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(-) Description

Title :  THREE-DIMENSIONAL STRUCTURE OF THE RGD-CONTAINING NEUROTOXIN HOMOLOGUE, DENDROASPIN
 
Authors :  M. J. Sutcliffe, M. Jaseja, E. I. Hyde, X. Lu, J. A. Williams
Date :  29 Sep 94  (Deposition) - 20 Dec 94  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (39x)
Keywords :  Cell Adhesion Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Sutcliffe, M. Jaseja, E. I. Hyde, X. Lu, J. A. Williams
Three-Dimensional Structure Of The Rgd-Containing Neurotoxin Homologue Dendroaspin.
Nat. Struct. Biol. V. 1 802 1994
PubMed-ID: 7634091  |  Reference-DOI: 10.1038/NSB1194-802
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DENDROASPIN
    Chains: A
    Engineered: YES
    Organism Common: EASTERN JAMESON'S MAMBA
    Organism Scientific: DENDROASPIS JAMESONI KAIMOSAE
    Organism Taxid: 8619
    Strain: KAIMOSAE

 Structural Features

(-) Chains, Units

  
NMR Structure (39x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1DRS)

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1RGDUNKNOWNARG A:43 , GLY A:44 , ASP A:45NULL

(-) SS Bonds  (4, 4)

NMR Structure
No.Residues
1A:3 -A:22
2A:17 -A:37
3A:39 -A:51
4A:52 -A:57

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1DRS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:59
 aligned with 3SPM_DENJA | P28375 from UniProtKB/Swiss-Prot  Length:59

    Alignment length:59
                                    10        20        30        40        50         
            3SPM_DENJA    1 RICYNHLGTKPPTTETCQEDSCYKNIWTFDNIIRRGCGCFTPRGDMPGPYCCESDKCNL 59
               SCOP domains d1drsa_ A: Dendroaspin                                      SCOP domains
               CATH domains 1drsA00 A:1-59 CD59                                         CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author eeeee.......eeeee...eeee...........eee...........eee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1drs A  1 RICYNHLGTKPPTTETCQEDSCYKNIWTFDNIIRRGCGCFTPRGDMPGPYCCESDKCNL 59
                                    10        20        30        40        50
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DRS)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (3SPM_DENJA | P28375)
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        3SPM_DENJA | P28375: 2la1

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