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(-) Description

Title :  SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN OF THE TRAM PROTEIN
 
Authors :  T. Stockner, C. Plugariu, G. Koraimann, G. Hoegenauer, W. Bermel, S. Prytulla, H. Sterk
Date :  23 Dec 99  (Deposition) - 04 Apr 01  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Helix-Loop-Helix, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Stockner, C. Plugariu, G. Koraimann, G. Hogenauer, W. Bermel, S. Prytulla, H. Sterk
Solution Structure Of The Dna-Binding Domain Of Tram.
Biochemistry V. 40 3370 2001
PubMed-ID: 11258958  |  Reference-DOI: 10.1021/BI002031C
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRAM PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A(+)
    Expression System Taxid: 562
    Fragment: TRAMM26
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1DP3)

(-) Sites  (0, 0)

(no "Site" information available for 1DP3)

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1DP3)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:55
 aligned with TRAM2_ECOLX | P07294 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:55
                                    11        21        31        41        51     
           TRAM2_ECOLX    2 AKVQAYVSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELGLRVYEAQMER 56
               SCOP domains d1dp3a_ A:                                              SCOP domains
               CATH domains 1dp3A00 A:2-56  [code=1.10.10.450, no name defined]     CATH domains
               Pfam domains ------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------- Transcript
                  1dp3 A  2 AKVQAYVSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELGLRVYEAQMER 56
                                    11        21        31        41        51
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DP3)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (TRAM2_ECOLX | P07294)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0000746    conjugation    The union or introduction of genetic information from compatible mating types that results in a genetically different individual. Conjugation requires direct cellular contact between the organisms.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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