1DJ3 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

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Title :   STRUCTURES OF ADENYLOSUCCINATE SYNTHETASE FROM TRITICUM AESTIVUM AND ARABIDOPSIS THALIANA

Authors :   L. Prade, S. W. Cowan-Jacob, P. Chemla, S. Potter, E. Ward, R. Fonne- Pfister

Date :   01 Dec 99 (Deposition) - 24 Mar 00 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym./Biol. Unit : A,B

Keywords :   Gdp, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Prade, S. W. Cowan-Jacob, P. Chemla, S. Potter, E. Ward, R. Fonne-Pfister
Structures Of Adenylosuccinate Synthetase From Triticum Aestivum And Arabidopsis Thaliana.
J. Mol. Biol. V. 296 569 2000
PubMed-ID: 10669609 | Reference-DOI: 10.1006/JMBI.1999.3473
(for further references see the PDB file header)

Molecule 1 - ADENYLOSUCCINATE SYNTHETASE
	Chains	:	A, B
	EC Number	:	6.3.4.4
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Cellular Location	:	CYTOSOL
	Expression System Taxid	:	562
	Expression System Vector	:	PET16B
	Organism Common	:	BREAD WHEAT
	Organism Scientific	:	TRITICUM AESTIVUM
	Organism Taxid	:	4565

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	GDP	2	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:30 , GLU A:31 , GLY A:32 , LYS A:33 , GLY A:34 , LYS A:35 , GLY A:57 , HIS A:58 , THR A:59 , LYS A:348 , ASP A:350 , GLY A:431 , VAL A:432 , GLY A:433 , PRO A:434	BINDING SITE FOR RESIDUE GDP A 500
2	AC2	SOFTWARE	ASP B:30 , GLU B:31 , GLY B:32 , LYS B:33 , GLY B:34 , LYS B:35 , GLY B:57 , HIS B:58 , THR B:59 , LYS B:348 , ASP B:350 , GLY B:431 , VAL B:432 , GLY B:433 , PRO B:434	BINDING SITE FOR RESIDUE GDP B 600

(no "SS Bond" information available for 1DJ3)

Asymmetric/Biological Unit

No.	Residues
1	Tyr A:252	-	Pro A:253
2	Tyr B:252	-	Pro B:253

(no "SAP(SNP)/Variant" information available for 1DJ3)

Asymmetric/Biological Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADENYLOSUCCIN_SYN_1	PS01266	Adenylosuccinate synthetase GTP-binding site.	PURA_WHEAT	61-68	2	A:27-34 B:27-34
2	ADENYLOSUCCIN_SYN_2	PS00513	Adenylosuccinate synthetase active site.	PURA_WHEAT	184-195	2	A:150-161 B:150-161

(no "Exon" information available for 1DJ3)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:432
 aligned with PURA_WHEAT | O24396 from UniProtKB/Swiss-Prot  Length:476

    Alignment length:432
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474  
           PURA_WHEAT    45 ADRVSSLSQVSGVLGSQWGDEGKGKLVDVLAPRFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILHEGTLCVVGNGAVIHVPGFFGEIDGLQSNGVSCDGRILVSDRAHLLFDLHQTVDGLREAELANSFIGTTKRGIGPCYSSKVTRNGLRVCDLRHMDTFGDKLDVLFEDAAARFEGFKYSKGMLKEEVERYKRFAERLEPFIADTVHVLNESIRQKKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVIGDLIGVVKAYTTRVGSGPFPTELLGEEGDVLRKAGMEFGTTTGRPRRCGWLDIVALKYCCDINGFSSLNLTKLDVLSGLPEIKLGVSYNQMDGEKLQSFPGDLDTLEQVQVNYEVLPGWDSDISSVRSYSELPQAARRYVERIEELAGVPVHYIGVGPGRDALIYK 476
               SCOP domains d1dj3a_ A: Adenylosuccinate synthetase, PurA                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------1dj3A01 A:18-118,A:218-282 Adenylosuccinate Synthetase, subunit A, domain 1                          1dj3A02 A:119-217 Adenylosuccinate Synthetase, subunit A, domain 2                                 1dj3A01 A:18-118,A:218-282                                       1dj3A03 A:283-442 Adenylosuccinate Synthetase, subunit A, domain 3                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhh...eeeeee......hhhhhhhhhhhhh.eeee........eeee.....eeee...hhhhhh...eeee....eehhhhhhhhhhhhhh........eeee...ee.hhhhhhhhhhhhhhh..........hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhh...eeeeeeee.hhh...............hhhhhhhhh.hhhhh..eeeeee.eeee...........hhhhhhhhhhhh..........eeeeeehhhhhhhhhhhh..eeeeehhhhhh...ee.ee.eee............hhhhhh..eee...ee...............hhhhhhhhhhhhhhhh....eee.......eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------ADENYLOS-------------------------------------------------------------------------------------------------------------------ADENYLOSUCCI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1dj3 A  11 ADRVSSLSNVSGVLGSQWGDEGKGKLVDVLAPRFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILHEGTLCVVGNGAVIHVPGFFGEIDGLQSNGVSCDGRILVSDRAHLLFDLHQTVDGLREAELANSFIGTTKRGIGPCYSSKVTRNGLRVCDLRHMDTFGDKLDVLFEDAAARFEGFKYSKGMLKEEVERYKKFAERLEPFIADTVHVLNESIRQKKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVIGDLIGVVKAYTTRVGSGPFPTELLGEEGDVLRKAGMEFGTTTGRPRRCGWLDIVALKYCCDINGFSSLNLTKLDVLSGLPEIKLGVSYNQMDGEKLQSFPGDLDTLEQVQVNYEVLPGWDSDISSVRSYSELPQAARRYVERIEELAGVPVHYIGVGPGRDALIYK 442
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440

Chain B from PDB  Type:PROTEIN  Length:432
 aligned with PURA_WHEAT | O24396 from UniProtKB/Swiss-Prot  Length:476

    Alignment length:432
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474  
           PURA_WHEAT    45 ADRVSSLSQVSGVLGSQWGDEGKGKLVDVLAPRFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILHEGTLCVVGNGAVIHVPGFFGEIDGLQSNGVSCDGRILVSDRAHLLFDLHQTVDGLREAELANSFIGTTKRGIGPCYSSKVTRNGLRVCDLRHMDTFGDKLDVLFEDAAARFEGFKYSKGMLKEEVERYKRFAERLEPFIADTVHVLNESIRQKKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVIGDLIGVVKAYTTRVGSGPFPTELLGEEGDVLRKAGMEFGTTTGRPRRCGWLDIVALKYCCDINGFSSLNLTKLDVLSGLPEIKLGVSYNQMDGEKLQSFPGDLDTLEQVQVNYEVLPGWDSDISSVRSYSELPQAARRYVERIEELAGVPVHYIGVGPGRDALIYK 476
               SCOP domains d1dj3b_ B: Adenylosuccinate synthetase, PurA                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------1dj3B01 B:18-118,B:218-282 Adenylosuccinate Synthetase, subunit A, domain 1                          1dj3B02 B:119-217 Adenylosuccinate Synthetase, subunit A, domain 2                                 1dj3B01 B:18-118,B:218-282                                       1dj3B03 B:283-442 Adenylosuccinate Synthetase, subunit A, domain 3                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhh...eeeeee......hhhhhhhhhhhhh.eeee........eeee.....eeee...hhhhhh...eeee....eehhhhhhhhhhhhhh........eeee...ee.hhhhhhhhhhhhhhh..........hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhh...eeeeeeee.hhh...............hhhhhhhhh.hhhhh..eeeeee.eeee...........hhhhhhhhhhhh..........eeeeeehhhhhhhhhhhh..eeeeehhhhhh...ee.ee.eee............hhhhhh..eee...ee...............hhhhhhhhhhhhhhhh..eeeee.......eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------ADENYLOS-------------------------------------------------------------------------------------------------------------------ADENYLOSUCCI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1dj3 B  11 ADRVSSLSNVSGVLGSQWGDEGKGKLVDVLAPRFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILHEGTLCVVGNGAVIHVPGFFGEIDGLQSNGVSCDGRILVSDRAHLLFDLHQTVDGLREAELANSFIGTTKRGIGPCYSSKVTRNGLRVCDLRHMDTFGDKLDVLFEDAAARFEGFKYSKGMLKEEVERYKKFAERLEPFIADTVHVLNESIRQKKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVIGDLIGVVKAYTTRVGSGPFPTELLGEEGDVLRKAGMEFGTTTGRPRRCGWLDIVALKYCCDINGFSSLNLTKLDVLSGLPEIKLGVSYNQMDGEKLQSFPGDLDTLEQVQVNYEVLPGWDSDISSVRSYSELPQAARRYVERIEELAGVPVHYIGVGPGRDALIYK 442
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: P-loop containing nucleoside triphosphate hydrolases (2083)

Superfamily: P-loop containing nucleoside triphosphate hydrolases (2083)

Family: Nitrogenase iron protein-like (152)

Protein domain: Adenylosuccinate synthetase, PurA (35)

Wheat (Triticum aestivum) [TaxId: 4565] (1)

1a	d1dj3a_	A:
1b	d1dj3b_	B:

(no "Pfam Domain" information available for 1DJ3)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (PURA_WHEAT | O24396)

molecular function
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0004019	adenylosuccinate synthase activity	Catalysis of the reaction: L-aspartate + GTP + IMP = N(6)-(1,2-dicarboxyethyl)-AMP + GDP + 3 H(+) + phosphate.
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0044208	'de novo' AMP biosynthetic process	The chemical reactions and pathways resulting in the formation of adenosine monophosphate (AMP) from inosine 5'-monophosphate (IMP).
	GO:0006164	purine nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Tyr A:252 - Pro A:253	[ RasMol ]
		Tyr B:252 - Pro B:253	[ RasMol ]

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	1dj3
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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