1DBA - JenaLib

Asym./Biol. Unit (Jmol Viewer)

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Title :   THREE-DIMENSIONAL STRUCTURE OF AN ANTI-STEROID FAB' AND PROGESTERONE-FAB' COMPLEX

Authors :   J. H. Arevalo, I. A. Wilson

Date :   10 Nov 92 (Deposition) - 31 Oct 93 (Release) - 25 Aug 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym./Biol. Unit : H,L

Keywords :   Immunoglobulin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. H. Arevalo, E. A. Stura, M. J. Taussig, I. A. Wilson
Three-Dimensional Structure Of An Anti-Steroid Fab' And Progesterone-Fab' Complex.
J. Mol. Biol. V. 231 103 1993
PubMed-ID: 8496956 | Reference-DOI: 10.1006/JMBI.1993.1260
(for further references see the PDB file header)

Molecule 1 - IGG1-KAPPA DB3 FAB (LIGHT CHAIN)
	Cell	:	HYBRIDOMA
	Chains	:	L
	Engineered	:	YES
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090

Molecule 2 - IGG1-KAPPA DB3 FAB (HEAVY CHAIN)
	Cell	:	HYBRIDOMA
	Chains	:	H
	Engineered	:	YES
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090

		1	2
Asymmetric/Biological Unit	:	H	L

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	EOH	2	Ligand/Ion	ETHANOL

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TRP H:100 , TYR L:32	BINDING SITE FOR RESIDUE EOH H 229
2	AC2	SOFTWARE	ASN H:35 , TRP H:100	BINDING SITE FOR RESIDUE EOH H 230

Asymmetric/Biological Unit

No.	Residues
1	H:22	-	H:92
2	H:142	-	H:208
3	L:23	-	L:88
4	L:134	-	L:194

Asymmetric/Biological Unit

No.	Residues
1	Ile L:7	-	Pro L:8
2	Val L:94	-	Pro L:95
3	Tyr L:140	-	Pro L:141
4	Phe H:148	-	Pro H:149
5	Glu H:150	-	Pro H:151

(no "SAP(SNP)/Variant" information available for 1DBA)

(no "PROSITE Motif" information available for 1DBA)

(no "Exon" information available for 1DBA)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain H from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                            
               SCOP domains d1dbah1 H:1-112 Immunoglobulin heavy chain variable domain, VH                                                        d1dbah2 H:113-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 1dbaH01 H:1-113 Immunoglobulins                                                                                        1dbaH02 H:114-227 Immunoglobulins                                                                  - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhh.eeeeeee.....eeeeeeee.....eee.hhhh..eeeee.hhh.eeeeee...hhhhheeeeeeee.............eeeee........eeeee..........eeeeeeeeeee.....eeee.........eeeeeeee..eeeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1dba H    1 QIQLVQSGPELKKPGETVKISCKASGYAFTNYGVNWVKEAPGKELKWMGWINIYTGEPTYVDDFKGRFAFSLETSASTAYLEINNLKNEDTATYFCTRGDYVNWYFDVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR  228
                                    10        20        30        40        50  |     59        69        79   |||  86        96    || 104       114       124     ||136       146       157|      172       184       194 ||||  207       217     ||  
                                                                              52A                            82A||               100A|                           130|                  154|||    169|      180|          196|||                  223|  
                                                                                                              82B|                100B                            133                   156||     171       183           199||                   226  
                                                                                                               82C                                                                       157|                              200|                        
                                                                                                                                                                                          162                               202

Chain L from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                         
               SCOP domains d1dbal1 L:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                      d1dbal2 L:108-211 Immunoglobulin light chain kappa constant domain, CL-kappa                             SCOP domains
               CATH domains 1dbaL01 L:1-108 Immunoglobulins                                                                                  1dbaL02 L:109-211 Immunoglobulins                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee............eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee...eeeee.......eeeee..hhhhhh.....eeeeeeee.....eeeee....ee...eeeee.........eeeeeee..hhhhhhh..eeeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1dba L    1 DVVMTQIPLSLPVNLGDQASISCRSSQSLIHSNGNTYLHWYLQKPGQSPKLLMYKVSNRFYGVPDRFSGSGSGTDFTLKISRVEAEDLGIYFCSQSSHVPPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR  211
                                    10        20       27C||      35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205      
                                                     27A||||                                                                                                                                                                                        
                                                      27B|||                                                                                                                                                                                        
                                                       27C||                                                                                                                                                                                        
                                                        27D|                                                                                                                                                                                        
                                                         27E

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Immunoglobulins (2282)

House mouse (Mus musculus) (616)

1a	1dbaL02	L:109-211
1b	1dbaH02	H:114-227
1c	1dbaL01	L:1-108
1d	1dbaH01	H:1-113

(no "Pfam Domain" information available for 1DBA)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Glu H:150 - Pro H:151	[ RasMol ]
		Ile L:7 - Pro L:8	[ RasMol ]
		Phe H:148 - Pro H:149	[ RasMol ]
		Tyr L:140 - Pro L:141	[ RasMol ]
		Val L:94 - Pro L:95	[ RasMol ]

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Description

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Ligands, Modified Residues, Ions (1, 2)

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SS Bonds (4, 4)

Cis Peptide Bonds (5, 5)

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