1CYD - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CARBONYL REDUCTASE COMPLEXED WITH NADPH AND 2-PROPANOL

Authors :   N. Tanaka, T. Nonaka, Y. Mitsui

Date :   01 Sep 95 (Deposition) - 14 Oct 96 (Release) - 04 Dec 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Short-Chain Dehydrogenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Tanaka, T. Nonaka, M. Nakanishi, Y. Deyashiki, A. Hara, Y. Mitsui
Crystal Structure Of The Ternary Complex Of Mouse Lung Carbonyl Reductase At 1. 8 A Resolution: The Structural Origin Of Coenzyme Specificity In The Short-Chain Dehydrogenase/Reductase Family.
Structure V. 4 33 1996
PubMed-ID: 8805511 | Reference-DOI: 10.1016/S0969-2126(96)00007-X
(for further references see the PDB file header)

Molecule 1 - CARBONYL REDUCTASE
	Cell	:	EPITHELIAL CELL
	Chains	:	A, B, C, D
	EC Number	:	1.1.1.184
	Organ	:	LUNG
	Organelle	:	MITOCHONDRION
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Other Details	:	THIS PROTEIN IS IDENTICAL WITH AN ADIPOCYTE 27-KDA PROTEIN
	Strain	:	DDY MICE
	Tissue	:	EPITHELIAL

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 8)

No.	Name	Count	Type	Full Name
1	IPA	4	Ligand/Ion	ISOPROPYL ALCOHOL
2	NDP	4	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:14 , GLY A:16 , LYS A:17 , GLY A:18 , ILE A:19 , THR A:38 , ARG A:39 , THR A:40 , VAL A:59 , ASP A:60 , LEU A:61 , ASN A:83 , ALA A:85 , ARG A:102 , VAL A:106 , VAL A:134 , SER A:135 , SER A:136 , TYR A:149 , LYS A:153 , PRO A:179 , THR A:180 , VAL A:181 , VAL A:182 , THR A:184 , MET A:186 , GLY A:187 , IPA A:246 , HOH A:250 , HOH A:283 , HOH A:284 , HOH A:302 , HOH A:311 , HOH A:347 , HOH A:361	BINDING SITE FOR RESIDUE NDP A 245
2	AC2	SOFTWARE	GLY B:14 , GLY B:16 , LYS B:17 , GLY B:18 , ILE B:19 , THR B:38 , ARG B:39 , THR B:40 , VAL B:59 , ASP B:60 , LEU B:61 , ASN B:83 , ALA B:84 , ALA B:85 , ARG B:102 , VAL B:106 , VAL B:134 , SER B:135 , SER B:136 , TYR B:149 , LYS B:153 , PRO B:179 , THR B:180 , VAL B:181 , VAL B:182 , THR B:184 , ASP B:185 , MET B:186 , GLY B:187 , IPA B:246 , HOH B:247 , HOH B:273 , HOH B:301 , HOH B:314 , HOH B:388 , HOH B:391 , HOH B:393	BINDING SITE FOR RESIDUE NDP B 245
3	AC3	SOFTWARE	GLY C:14 , GLY C:16 , LYS C:17 , GLY C:18 , ILE C:19 , THR C:38 , ARG C:39 , THR C:40 , VAL C:59 , ASP C:60 , LEU C:61 , ASN C:83 , ALA C:85 , VAL C:106 , VAL C:134 , SER C:135 , TYR C:149 , LYS C:153 , PRO C:179 , THR C:180 , VAL C:181 , VAL C:182 , THR C:184 , MET C:186 , GLY C:187 , IPA C:246 , HOH C:248 , HOH C:280 , HOH C:285 , HOH C:293 , HOH C:305 , HOH C:382	BINDING SITE FOR RESIDUE NDP C 245
4	AC4	SOFTWARE	GLY D:14 , GLY D:16 , LYS D:17 , GLY D:18 , ILE D:19 , THR D:38 , ARG D:39 , THR D:40 , VAL D:59 , ASP D:60 , LEU D:61 , ASN D:83 , ALA D:85 , VAL D:106 , VAL D:134 , SER D:135 , SER D:136 , TYR D:149 , LYS D:153 , PRO D:179 , THR D:180 , VAL D:181 , VAL D:182 , THR D:184 , MET D:186 , GLY D:187 , IPA D:246 , HOH D:248 , HOH D:253 , HOH D:340 , HOH D:353 , HOH D:364 , HOH D:394	BINDING SITE FOR RESIDUE NDP D 245
5	AC5	SOFTWARE	SER A:136 , LEU A:146 , TYR A:149 , VAL A:190 , NDP A:245	BINDING SITE FOR RESIDUE IPA A 246
6	AC6	SOFTWARE	SER B:136 , TYR B:149 , NDP B:245	BINDING SITE FOR RESIDUE IPA B 246
7	AC7	SOFTWARE	SER C:136 , TYR C:149 , NDP C:245	BINDING SITE FOR RESIDUE IPA C 246
8	AC8	SOFTWARE	SER D:136 , LEU D:146 , TYR D:149 , NDP D:245	BINDING SITE FOR RESIDUE IPA D 246

(no "SS Bond" information available for 1CYD)

(no "Cis Peptide Bond" information available for 1CYD)

(no "SAP(SNP)/Variant" information available for 1CYD)

Asymmetric/Biological Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_SHORT	PS00061	Short-chain dehydrogenases/reductases family signature.	CBR2_MOUSE	136-164	4	A:136-164 B:136-164 C:136-164 D:136-164

(no "Exon" information available for 1CYD)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:242
 aligned with CBR2_MOUSE | P08074 from UniProtKB/Swiss-Prot  Length:244

    Alignment length:242
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242  
           CBR2_MOUSE     3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGYLAS 244
               SCOP domains d1cyda_ A: Carbonyl reductase                                                                                                                                                                                                                      SCOP domains
               CATH domains 1cydA00 A:3-244 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....hhhhhhhhhhhh...eeeeee..hhhhhhhhhh....eeee.....hhhhhhhh.......eeee..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee............hhhhhhhhhhhhhhhhhhhhh....eeeeeeee.....hhhhhh...hhhhhhhhhh........hhhhhhhhhhhh..........eeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: A:136-164    -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cyd A   3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGYLAS 244
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242

Chain B from PDB  Type:PROTEIN  Length:242
 aligned with CBR2_MOUSE | P08074 from UniProtKB/Swiss-Prot  Length:244

    Alignment length:242
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242  
           CBR2_MOUSE     3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGYLAS 244
               SCOP domains d1cydb_ B: Carbonyl reductase                                                                                                                                                                                                                      SCOP domains
               CATH domains 1cydB00 B:3-244 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....hhhhhhhhhhhh...eeeeee..hhhhhhhhhh....eeee.....hhhhhhhh.......eeee..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee............hhhhhhhhhhhhhhhhhhhhh....eeeeeeee.....hhhhhh...hhhhhhhhhh........hhhhhhhhhhhh..........eeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: B:136-164    -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cyd B   3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGYLAS 244
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242

Chain C from PDB  Type:PROTEIN  Length:242
 aligned with CBR2_MOUSE | P08074 from UniProtKB/Swiss-Prot  Length:244

    Alignment length:242
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242  
           CBR2_MOUSE     3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGYLAS 244
               SCOP domains d1cydc_ C: Carbonyl reductase                                                                                                                                                                                                                      SCOP domains
               CATH domains 1cydC00 C:3-244 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....hhhhhhhhhhhh...eeeeee..hhhhhhhhhh....eeee.....hhhhhhhh.......eeee..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee............hhhhhhhhhhhhhhhhhhhhh....eeeeeeee.....hhhhhh...hhhhhhhhhh........hhhhhhhhhhhh..........eeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: C:136-164    -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cyd C   3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGYLAS 244
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242

Chain D from PDB  Type:PROTEIN  Length:242
 aligned with CBR2_MOUSE | P08074 from UniProtKB/Swiss-Prot  Length:244

    Alignment length:242
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242  
           CBR2_MOUSE     3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGYLAS 244
               SCOP domains d1cydd_ D: Carbonyl reductase                                                                                                                                                                                                                      SCOP domains
               CATH domains 1cydD00 D:3-244 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....hhhhhhhhhhhh...eeeeee..hhhhhhhhhh....eeee.....hhhhhhhh.......eeee..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee............hhhhhhhhhhhhhhhhhhhhh....eeeeeeee.....hhhhhh...hhhhhhhhhh........hhhhhhhhhhhh..........eeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: D:136-164    -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cyd D   3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGYLAS 244
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: Tyrosine-dependent oxidoreductases (503)

Protein domain: Carbonyl reductase (2)

Mouse (Mus musculus) [TaxId: 10090] (1)

1a	d1cyda_	A:
1b	d1cydb_	B:
1c	d1cydc_	C:
1d	d1cydd_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

House mouse (Mus musculus) (11)

1a	1cydA00	A:3-244
1b	1cydB00	B:3-244
1c	1cydC00	C:3-244
1d	1cydD00	D:3-244

(no "Pfam Domain" information available for 1CYD)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (CBR2_MOUSE | P08074)

molecular function
	GO:0004090	carbonyl reductase (NADPH) activity	Catalysis of the reaction: R-CHOH-R' + NADP+ = R-CO-R' + NADPH + H+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0043621	protein self-association	Interacting selectively and non-covalently with a domain within the same polypeptide.
biological process
	GO:0006116	NADH oxidation	A metabolic process that results in the oxidation of reduced nicotinamide adenine dinucleotide, NADH, to the oxidized form, NAD.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0051262	protein tetramerization	The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
cellular component
	GO:0005759	mitochondrial matrix	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1cyd)

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	1cyd
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Description

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Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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