1CT9 - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF ASPARAGINE SYNTHETASE B FROM ESCHERICHIA COLI

Authors :   T. M. Larsen, S. K. Boehlein, S. M. Schuster, N. G. J. Richards, J. B. Thoden, H. M. Holden, I. Rayment

Date :   20 Aug 99 (Deposition) - 15 Dec 99 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,C  (1x)

Keywords :   Amidotransferase, Substrate Channeling, Asparagine Biosynthesis, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. M. Larsen, S. K. Boehlein, S. M. Schuster, N. G. Richards, J. B. Thoden, H. M. Holden, I. Rayment
Three-Dimensional Structure Of Escherichia Coli Asparagine Synthetase B: A Short Journey From Substrate To Product.
Biochemistry V. 38 16146 1999
PubMed-ID: 10587437 | Reference-DOI: 10.1021/BI9915768
(for further references see the PDB file header)

Molecule 1 - ASPARAGINE SYNTHETASE B
	Chains	:	A, B, C, D
	EC Number	:	6.3.5.4
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Mutation	:	YES
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A			D
Biological Unit 2 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 28)

No.	Name	Count	Type	Full Name
1	AMP	4	Ligand/Ion	ADENOSINE MONOPHOSPHATE
2	CL	4	Ligand/Ion	CHLORIDE ION
3	GLN	4	Mod. Amino Acid	GLUTAMINE
4	IUM	16	Ligand/Ion	URANYL (VI) ION

Biological Unit 1 (3, 12)

No.	Name	Count	Type	Full Name
1	AMP	2	Ligand/Ion	ADENOSINE MONOPHOSPHATE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	GLN	2	Mod. Amino Acid	GLUTAMINE
4	IUM	8	Ligand/Ion	URANYL (VI) ION

Biological Unit 2 (3, 12)

No.	Name	Count	Type	Full Name
1	AMP	2	Ligand/Ion	ADENOSINE MONOPHOSPHATE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	GLN	2	Mod. Amino Acid	GLUTAMINE
4	IUM	8	Ligand/Ion	URANYL (VI) ION

Asymmetric Unit (28, 28)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:238 , ASP A:351 , AMP A:1100 , IUM A:1104 , HOH A:1312	BINDING SITE FOR RESIDUE IUM A 1101
02	AC2	SOFTWARE	GLY A:349 , ASP A:351 , GLU A:352 , TYR A:357 , ASP A:384 , AMP A:1100 , HOH A:1312	BINDING SITE FOR RESIDUE IUM A 1102
03	AC3	SOFTWARE	GLU A:352 , TYR A:357 , LYS A:376 , ASP A:384	BINDING SITE FOR RESIDUE IUM A 1103
04	AC4	SOFTWARE	SER A:234 , ASP A:238 , SER A:239 , AMP A:1100 , IUM A:1101	BINDING SITE FOR RESIDUE IUM A 1104
05	AC5	SOFTWARE	TYR A:149 , THR A:170	BINDING SITE FOR RESIDUE CL A 1105
06	AC6	SOFTWARE	ASP B:238 , ASP B:351 , AMP B:1107 , IUM B:1111	BINDING SITE FOR RESIDUE IUM B 1108
07	AC7	SOFTWARE	GLU B:348 , GLU B:352 , TYR B:357 , ASP B:384 , AMP B:1107	BINDING SITE FOR RESIDUE IUM B 1109
08	AC8	SOFTWARE	GLU B:352 , TYR B:357 , LYS B:376 , ASP B:384	BINDING SITE FOR RESIDUE IUM B 1110
09	AC9	SOFTWARE	SER B:234 , ASP B:238 , SER B:239 , AMP B:1107 , IUM B:1108	BINDING SITE FOR RESIDUE IUM B 1111
10	BC1	SOFTWARE	THR B:170	BINDING SITE FOR RESIDUE CL B 1112
11	BC2	SOFTWARE	ASP C:238 , ASP C:351 , AMP C:1114 , IUM C:1118	BINDING SITE FOR RESIDUE IUM C 1115
12	BC3	SOFTWARE	GLU C:352 , ASP C:384 , AMP C:1114	BINDING SITE FOR RESIDUE IUM C 1116
13	BC4	SOFTWARE	GLU C:352 , TYR C:357 , LYS C:376 , ASP C:384	BINDING SITE FOR RESIDUE IUM C 1117
14	BC5	SOFTWARE	SER C:234 , GLY C:236 , ASP C:238 , AMP C:1114 , IUM C:1115	BINDING SITE FOR RESIDUE IUM C 1118
15	BC6	SOFTWARE	THR C:170	BINDING SITE FOR RESIDUE CL C 1119
16	BC7	SOFTWARE	ASP D:238 , GLY D:347 , ASP D:351 , AMP D:1121 , IUM D:1123 , HOH D:1278	BINDING SITE FOR RESIDUE IUM D 1122
17	BC8	SOFTWARE	GLY D:349 , GLU D:352 , ASP D:384 , IUM D:1122	BINDING SITE FOR RESIDUE IUM D 1123
18	BC9	SOFTWARE	GLU D:352 , TYR D:357 , ASP D:384 , HOH D:1305	BINDING SITE FOR RESIDUE IUM D 1124
19	CC1	SOFTWARE	SER D:234 , GLY D:236 , SER D:239 , AMP D:1121 , HOH D:1278	BINDING SITE FOR RESIDUE IUM D 1125
20	CC2	SOFTWARE	TYR D:149 , THR D:170 , ILE D:171 , LYS D:172 , HOH D:1261	BINDING SITE FOR RESIDUE CL D 1126
21	CC3	SOFTWARE	LEU A:232 , LEU A:233 , SER A:234 , SER A:239 , PHE A:270 , ALA A:271 , VAL A:272 , ASP A:279 , MET A:332 , SER A:346 , GLY A:347 , GLU A:348 , ASP A:351 , ASP A:384 , IUM A:1101 , IUM A:1102 , IUM A:1104	BINDING SITE FOR RESIDUE AMP A 1100
22	CC4	SOFTWARE	ALA A:1 , ARG A:49 , LEU A:50 , ILE A:52 , VAL A:53 , ASN A:74 , GLY A:75 , GLU A:76 , ASP A:98 , HOH A:1109 , HOH A:1133	BINDING SITE FOR RESIDUE GLN A 1106
23	CC5	SOFTWARE	LEU B:232 , LEU B:233 , SER B:234 , ASP B:238 , SER B:239 , PHE B:270 , ALA B:271 , VAL B:272 , SER B:346 , GLY B:347 , GLU B:348 , ASP B:351 , ASP B:384 , IUM B:1108 , IUM B:1109 , IUM B:1111	BINDING SITE FOR RESIDUE AMP B 1107
24	CC6	SOFTWARE	ALA B:1 , ARG B:49 , LEU B:50 , ILE B:52 , VAL B:53 , ASN B:74 , GLY B:75 , GLU B:76 , ASP B:98 , HOH B:1116 , HOH B:1141	BINDING SITE FOR RESIDUE GLN B 1113
25	CC7	SOFTWARE	LEU C:232 , LEU C:233 , SER C:234 , ASP C:238 , SER C:239 , PHE C:270 , ALA C:271 , VAL C:272 , MET C:332 , SER C:346 , GLY C:347 , GLU C:348 , ASP C:351 , ASP C:384 , ARG C:387 , IUM C:1115 , IUM C:1116 , IUM C:1118	BINDING SITE FOR RESIDUE AMP C 1114
26	CC8	SOFTWARE	ALA C:1 , ARG C:49 , LEU C:50 , ILE C:52 , VAL C:53 , ASN C:74 , GLY C:75 , GLU C:76 , ASP C:98 , CYS C:99 , HOH C:1165	BINDING SITE FOR RESIDUE GLN C 1120
27	CC9	SOFTWARE	LEU D:232 , LEU D:233 , SER D:234 , SER D:239 , PHE D:270 , ALA D:271 , VAL D:272 , MET D:332 , SER D:346 , GLY D:347 , GLU D:348 , ASP D:384 , IUM D:1122 , IUM D:1125	BINDING SITE FOR RESIDUE AMP D 1121
28	DC1	SOFTWARE	ALA D:1 , ARG D:49 , LEU D:50 , ILE D:52 , VAL D:53 , ASN D:74 , GLY D:75 , GLU D:76 , ASP D:98 , HOH D:1155 , HOH D:1181	BINDING SITE FOR RESIDUE GLN D 1127

(no "SS Bond" information available for 1CT9)

Asymmetric Unit

No.	Residues
1	Gln A:60	-	Pro A:61
2	Gln B:60	-	Pro B:61
3	Gln C:60	-	Pro C:61
4	Gln D:60	-	Pro D:61

(no "SAP(SNP)/Variant" information available for 1CT9)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GATASE_TYPE_2	PS51278	Glutamine amidotransferase type 2 domain profile.	ASNB_ECOLI	2-186	4	A:2-185 B:2-185 C:2-185 D:2-185

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GATASE_TYPE_2	PS51278	Glutamine amidotransferase type 2 domain profile.	ASNB_ECOLI	2-186	2	A:2-185 - - D:2-185

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GATASE_TYPE_2	PS51278	Glutamine amidotransferase type 2 domain profile.	ASNB_ECOLI	2-186	2	- B:2-185 C:2-185 -

(no "Exon" information available for 1CT9)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:497
 aligned with ASNB_ECOLI | P22106 from UniProtKB/Swiss-Prot  Length:554

    Alignment length:516
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511      
           ASNB_ECOLI     2 CSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNGKMEKHILRECFEAYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSDQQLETARFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPG 517
               SCOP domains d1ct9a2 A:1-192 Asparagine synthetase B, N-terminal domain                                                                                                                                      d1ct9a1 A:193-516 Asparagine synthetase B, C-terminal doma                in                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1ct9A01 A:1-192 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                      1ct9A02 A:193-516 Tyrosyl-Transfer RNA Synthetase , subuni                t E, domain 1                                                                                                                                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhhhhhhhh..eeeeee...eeeeeee............ee.....eeeeeeeee.hhhhhhhhhh........hhhhhhhhhhhhhh..hhhhh.eeeeeeeee....eeeeee........eeee.....eeee.hhhhh.....eeee....eeee.....eee...hhhhhhhhhh....hhhhhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhh----------------.eeeeee...hhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...eee...hhhhhhh.hhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhh...eeehhhhhhhhhhhhhhhhhhhh..---...hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE GATASE_TYPE_2  PDB: A:2-185 UniProt: 2-186                                                                                                                                               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ct9 A   1 ASIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYA----------------LHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMC---KMEKHILRECFEAYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSDQQLETARFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPG 516
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250         -      |270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420 |   | 430       440       450       460       470       480       490       500       510      
                                                                                                                                                                                                                                                                                   250              267                                                                                                                                                        422 426

Chain B from PDB  Type:PROTEIN  Length:495
 aligned with ASNB_ECOLI | P22106 from UniProtKB/Swiss-Prot  Length:554

    Alignment length:516
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511      
           ASNB_ECOLI     2 CSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNGKMEKHILRECFEAYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSDQQLETARFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPG 517
               SCOP domains d1ct9b2 B:1-192 Asparagine synthetase B, N-terminal domain                                                                                                                                      d1ct9b1 B:193-516 Asparagine synthetase B, C-terminal doma             in                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1ct9B01 B:1-192 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                      1ct9B02 B:193-513 Tyrosyl-Transfer RNA Synthetase , subuni             t E, domain 1                                                                                                                                                                                                                                             --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhhhhhhhh..eeeeee...eeeeeee............ee.....eeeeeeeee.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.eeeeeeeee....eeeeee........eeee.....eeee.hhhhh.....eeee....eeee.....eee...hhhhhhhhhh....hhhhhhhhhhhhhhhh......eeee...hhhhhhhhhhhhhhh-------------....eeeeee...hhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...eee...hhhhhhh.hhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhhh...eeehhhhhhhhhhhhh..hhhhhh.---...hhhhhhhhh...hhhhhh..-----....hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE GATASE_TYPE_2  PDB: B:2-185 UniProt: 2-186                                                                                                                                               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ct9 B   1 ASIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYA-------------WPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMC---KMEKHILRECFEAYLPASVAWRQ-----DGVGYSWIDTLKEVAAQQVSDQQLETARFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPG 516
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250         -   |   270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420 |   | 430       440       | -   |   460       470       480       490       500       510      
                                                                                                                                                                                                                                                                                   250           264                                                                                                                                                           422 426                   448   454

Chain C from PDB  Type:PROTEIN  Length:495
 aligned with ASNB_ECOLI | P22106 from UniProtKB/Swiss-Prot  Length:554

    Alignment length:516
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511      
           ASNB_ECOLI     2 CSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNGKMEKHILRECFEAYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSDQQLETARFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPG 517
               SCOP domains d1ct9c2 C:1-192 Asparagine synthetase B, N-terminal domain                                                                                                                                      d1ct9c1 C:193-516 Asparagine synthetase B, C-terminal doma             in                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1ct9C01 C:1-192 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                      1ct9C02 C:193-513 Tyrosyl-Transfer RNA Synthetase , subuni             t E, domain 1                                                                                                                                                                                                                                             --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhhhhhhhh..eeeeee...eeeeeee............ee.....eeeeeeeee.hhhhhhhhhh........hhhhhhhhhhhhhh..hhhhh.eeeeeeeee....eeeeee........eeee.....eeee.hhhhh.....eeee....eeee.....eee...hhhhhhhhh.....hhhhhhhhhhhhhhhh......eeee...hhhhhhhhhhhhhhh-------------....eeeeee...hhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...eee...hhhhhhh.hhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhh...eeehhhhhhhhhhhhh..hhhhhh.---...hhhhhhhhh...hhhhhh..-----...hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE GATASE_TYPE_2  PDB: C:2-185 UniProt: 2-186                                                                                                                                               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ct9 C   1 ASIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYA-------------WPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMC---KMEKHILRECFEAYLPASVAWRQ-----DGVGYSWIDTLKEVAAQQVSDQQLETARFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPG 516
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250         -   |   270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420 |   | 430       440       | -   |   460       470       480       490       500       510      
                                                                                                                                                                                                                                                                                   250           264                                                                                                                                                           422 426                   448   454

Chain D from PDB  Type:PROTEIN  Length:495
 aligned with ASNB_ECOLI | P22106 from UniProtKB/Swiss-Prot  Length:554

    Alignment length:516
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511      
           ASNB_ECOLI     2 CSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNGKMEKHILRECFEAYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSDQQLETARFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPG 517
               SCOP domains d1ct9d2 D:1-192 Asparagine synthetase B, N-terminal domain                                                                                                                                      d1ct9d1 D:193-516 Asparagine synthetase B, C-terminal domai              n                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1ct9D01 D:1-192 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                      1ct9D02 D:193-513 Tyrosyl-Transfer RNA Synthetase , subunit               E, domain 1                                                                                                                                                                                                                                            --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhhhhhhhh..eeeeee...eeeeeee............ee.....eeeeeeeee.hhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.eeeeeeeee....eeeeee........eeee.....eeee.hhhhh.....eeee....eeee.....eee...hhhhhhhhh.....hhhhhhhhhhhhhhhh......eeee...hhhhhhhhhhhhhhh.--------------..eeeeee...hhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..eee...hhhhhhh.hhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhh...eeehhhhhhhhhhhhhhhhhhhhh..--...hhhhhhhhhhhhhhhhhhh.-----...hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE GATASE_TYPE_2  PDB: D:2-185 UniProt: 2-186                                                                                                                                               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ct9 D   1 ASIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAA--------------QLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMCG--KMEKHILRECFEAYLPASVAWRQ-----DGVGYSWIDTLKEVAAQQVSDQQLETARFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPG 516
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250|        -     | 270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420  |  | 430       440       | -   |   460       470       480       490       500       510      
                                                                                                                                                                                                                                                                                    251            266                                                                                                                                                          423  |                   448   454                                                              
                                                                                                                                                                                                                                                                                                                                                                                                                                                                   426

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 (328)

Escherichia coli. Organism_taxid: 562. (13)

1a	1ct9B02	B:193-513
1b	1ct9C02	C:193-513
1c	1ct9D02	D:193-513
1d	1ct9A02	A:193-516

Architecture: 4-Layer Sandwich (459)

Topology: Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 (128)

Homologous Superfamily: Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 (124)

Escherichia coli. Organism_taxid: 562. (7)

2a	1ct9A01	A:1-192
2b	1ct9B01	B:1-192
2c	1ct9C01	C:1-192
2d	1ct9D01	D:1-192

(no "Pfam Domain" information available for 1CT9)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (ASNB_ECOLI | P22106)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016597	amino acid binding	Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
	GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity	Catalysis of the reaction: ATP + L-aspartate + L-glutamine = AMP + diphosphate + L-asparagine + L-glutamate.
	GO:0004071	aspartate-ammonia ligase activity	Catalysis of the reaction: ATP + L-aspartate + NH3 = AMP + diphosphate + L-asparagine.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
	GO:0070981	L-asparagine biosynthetic process	The chemical reactions and pathways resulting in the formation of asparagine, (2S)-2-amino-3-carbamoylpropanoic acid.
	GO:0006529	asparagine biosynthetic process	The chemical reactions and pathways resulting in the formation of asparagine, 2-amino-3-carbamoylpropanoic acid.
	GO:0008652	cellular amino acid biosynthetic process	The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
	GO:0009063	cellular amino acid catabolic process	The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents.
	GO:0006541	glutamine metabolic process	The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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	Cis Peptide Bonds
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		Gln D:60 - Pro D:61	[ RasMol ]

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	1ct9
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(no "Entries Sharing at Least One Protein Chain" available for 1CT9)

(no "Related Entries Specified in the PDB File" available for 1CT9)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 28)

Sites (28, 28)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

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SCOP Domains (2, 8)

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