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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CH3 DOMAIN FROM THE MAK33 ANTIBODY
 
Authors :  M. J. Thies, J. Mayer, J. G. Augustine, C. A. Frederick, H. Lilie, J. Buchner
Date :  06 Aug 99  (Deposition) - 11 Sep 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Constant Domain, C1-Subset, Immunoglobulin, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Thies, J. Mayer, J. G. Augustine, C. A. Frederick, H. Lilie, J. Buchner
Folding And Association Of The Antibody Domain Ch3: Prolyl Isomerization Preceeds Dimerization.
J. Mol. Biol. V. 293 67 1999
PubMed-ID: 10512716  |  Reference-DOI: 10.1006/JMBI.1999.3128
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CH3 DOMAIN OF MAK33 ANTIBODY
    Chains: A, B
    Fragment: CH3 DOMAIN OF MAK33 ANTIBODY
    Mutation: YES
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1CQK)

(-) Sites  (0, 0)

(no "Site" information available for 1CQK)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:28 -A:86
2B:228 -B:286

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Phe A:34 -Pro A:35
2Phe B:234 -Pro B:235

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1CQK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1CQK)

(-) Exons   (0, 0)

(no "Exon" information available for 1CQK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains d1cqka_ A: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma                              SCOP domains
               CATH domains 1cqkA00 A:4-104 Immunoglobulins                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..hhhhh...eeeeeeeeeee.....eeeeee..ee...eee...ee.....eeeeeeeeeehhhhhh...eeeeee...hhh.eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 1cqk A   4 PAAPQVYTIPPPLEQMAKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLHNHHTEKSLSH 104
                                    13        23        33        43        53        63        73        83        93       103 


Chain B from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains d1cqkb_ B: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma                              SCOP domains
               CATH domains 1cqkB00 B:204-304 Immunoglobulins                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..hhhhh...eeeeeeeeeee.....eeeeee..ee...eee...ee.....eeeeeeeeeehhhhhh..eeeeeee...hhh.eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 1cqk B 204 PAAPQVYTIPPPLEQMAKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLHNHHTEKSLSH 304
                                   213       223       233       243       253       263       273       283       293       303
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1CQK)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  Cis Peptide Bonds
    Phe A:34 - Pro A:35   [ RasMol ]  
    Phe B:234 - Pro B:235   [ RasMol ]  
 

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 Related Entries

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