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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF A SOLUBLE SECRETED CHEMOKINE INHIBITOR, VCCI, FROM COWPOX VIRUS
 
Authors :  A. Carfi, C. A. Smith, P. J. Smolak, J. Mcgrew, D. C. Wiley
Date :  05 Aug 99  (Deposition) - 12 Nov 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Beta Sandwich, Chemokine, Cytokine (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Carfi, C. A. Smith, P. J. Smolak, J. Mcgrew, D. C. Wiley
Structure Of A Soluble Secreted Chemokine Inhibitor Vcci (P35) From Cowpox Virus.
Proc. Natl. Acad. Sci. Usa V. 96 12379 1999
PubMed-ID: 10535930  |  Reference-DOI: 10.1073/PNAS.96.22.12379
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - VIRAL CHEMOKINE INHIBITOR
    Chains: A, B
    Engineered: YES
    Expression System: SACCHAROMYCES CEREVISIAE
    Expression System Common: BAKER'S YEAST
    Expression System Taxid: 4932
    Fragment: NATIVE PROTEIN
    Organism Scientific: COWPOX VIRUS
    Organism Taxid: 10243

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1CQ3)

(-) Sites  (0, 0)

(no "Site" information available for 1CQ3)

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:8 -A:185
2A:38 -A:223
3A:79 -A:124
4A:132 -A:171
5B:8 -B:185
6B:38 -B:223
7B:79 -B:124
8B:132 -B:171

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1CQ3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1CQ3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1CQ3)

(-) Exons   (0, 0)

(no "Exon" information available for 1CQ3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:224
 aligned with O73568_COWPX | O73568 from UniProtKB/TrEMBL  Length:255

    Alignment length:236
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249      
         O73568_COWPX    20 SLQQSSSSCTEEENKHHMGIDVIIKVTKQDQTPTNDKICQSVTEITESESDPDPEVESSSDSTSVEDVDPPTTYYSIIGGGLRMNFGFTKCPQIKSISESADGNTVNARLSSVSPGQGKDSPAITHEEALAMIKDCEVSIDIRCSEEEKDSDIKTHPVLGSNISHKKVSYEDIIGSTIVDTKCVKNLEFSVRIGDMCKESSELEVKDGFKYVDGSASEGATDDTSLIDSTKLKACV 255
               SCOP domains d1c q3a_ A: Soluble secreted chemokine inhibitor, VCCI                                                                                                                                                                                       SCOP domains
               CATH domains 1cq 3A00 A:1-224 Viral Chemokine Inhibitor; Chain A                                                                                                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...-..........ee.eeeeeeeeeee............eeeeee......eeeee..-----------.eeeeeeee..eeeeeeee......eeeeeee..eeeeeee............eehhhhhhhhhhheeeeeeee........................ee...eeeeeee...eeeeeeeeeeee....hhhh.eeeeeeee..eee..........hhhhhee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cq3 A   1 SFS-SSSSCTEEENKHHMGIDVIIKVTKQDQTPTNDKICQSVTEVTESEDESEEVVKGD-----------PTTYYTVVGGGLTMDFGFTKCPKISSISEYSDGNTVNARLSSVSPGQGKDSPAITREEALSMIKDCEMSINIKCSEEEKDSNIKTHPVLGSNISHKKVSYEDIIGSTIVDTKCVKNLEISVRIGDMCKESSELEVKDGFKYVDGSASEDAADDTSLINSAKLIACV 224
                              | |    9        19        29        39        49        |-         -|       68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218      
                              3 4                                                    58          59                                                                                                                                                                     


Chain A from PDB  Type:PROTEIN  Length:224
 aligned with Q85307_COWPX | Q85307 from UniProtKB/TrEMBL  Length:246

    Alignment length:224
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242    
         Q85307_COWPX    23 SFSSSSSCTEEENKHHMGIDVIIKVTKQDQTPTNDKICQSVTEVTESEDESEEVVKGDPTTYYTVVGGGLTMDFGFTKCPKISSISEYSDGNTVNARLSSVSPGQGKDSPAITREEALSMIKDCEMSINIKCSEEEKDSNIKTHPVLGSNISHKKVSYEDIIGSTIVDTKCVKNLEISVRIGDMCKESSELEVKDGFKYVDGSASEDAADDTSLINSAKLIACV 246
               SCOP domains d1cq3a_ A: Soluble secreted chemokine inhibitor, VCCI                                                                                                                                                                            SCOP domains
               CATH domains 1cq3A00 A:1-224 Viral Chemokine Inhibitor; Chain A                                                                                                                                                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............ee.eeeeeeeeeee............eeeeee......eeeee...eeeeeeee..eeeeeeee......eeeeeee..eeeeeee............eehhhhhhhhhhheeeeeeee........................ee...eeeeeee...eeeeeeeeeeee....hhhh.eeeeeeee..eee..........hhhhhee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cq3 A   1 SFSSSSSCTEEENKHHMGIDVIIKVTKQDQTPTNDKICQSVTEVTESEDESEEVVKGDPTTYYTVVGGGLTMDFGFTKCPKISSISEYSDGNTVNARLSSVSPGQGKDSPAITREEALSMIKDCEMSINIKCSEEEKDSNIKTHPVLGSNISHKKVSYEDIIGSTIVDTKCVKNLEISVRIGDMCKESSELEVKDGFKYVDGSASEDAADDTSLINSAKLIACV 224
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    


Chain B from PDB  Type:PROTEIN  Length:224
 aligned with O73568_COWPX | O73568 from UniProtKB/TrEMBL  Length:255

    Alignment length:236
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249      
         O73568_COWPX    20 SLQQSSSSCTEEENKHHMGIDVIIKVTKQDQTPTNDKICQSVTEITESESDPDPEVESSSDSTSVEDVDPPTTYYSIIGGGLRMNFGFTKCPQIKSISESADGNTVNARLSSVSPGQGKDSPAITHEEALAMIKDCEVSIDIRCSEEEKDSDIKTHPVLGSNISHKKVSYEDIIGSTIVDTKCVKNLEFSVRIGDMCKESSELEVKDGFKYVDGSASEGATDDTSLIDSTKLKACV 255
               SCOP domains d1c q3b_ B: Soluble secreted chemokine inhibitor, VCCI                                                                                                                                                                                       SCOP domains
               CATH domains 1cq 3B00 B:1-224 Viral Chemokine Inhibitor; Chain A                                                                                                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...-..........ee.eeeeeeeeeee............eeeeee......eeeee..-----------.eeeeeeee..eeeeeeee......eeeeeee..eeeeeee............eehhhhhhhhhhheeeeeeee.............................eeeeeee...eeeeeeeeeeee.........eeeeeeee..eee..........hhhhhee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cq3 B   1 SFS-SSSSCTEEENKHHMGIDVIIKVTKQDQTPTNDKICQSVTEVTESEDESEEVVKGD-----------PTTYYTVVGGGLTMDFGFTKCPKISSISEYSDGNTVNARLSSVSPGQGKDSPAITREEALSMIKDCEMSINIKCSEEEKDSNIKTHPVLGSNISHKKVSYEDIIGSTIVDTKCVKNLEISVRIGDMCKESSELEVKDGFKYVDGSASEDAADDTSLINSAKLIACV 224
                              | |    9        19        29        39        49        |-         -|       68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218      
                              3 4                                                    58          59                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:224
 aligned with Q85307_COWPX | Q85307 from UniProtKB/TrEMBL  Length:246

    Alignment length:224
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242    
         Q85307_COWPX    23 SFSSSSSCTEEENKHHMGIDVIIKVTKQDQTPTNDKICQSVTEVTESEDESEEVVKGDPTTYYTVVGGGLTMDFGFTKCPKISSISEYSDGNTVNARLSSVSPGQGKDSPAITREEALSMIKDCEMSINIKCSEEEKDSNIKTHPVLGSNISHKKVSYEDIIGSTIVDTKCVKNLEISVRIGDMCKESSELEVKDGFKYVDGSASEDAADDTSLINSAKLIACV 246
               SCOP domains d1cq3b_ B: Soluble secreted chemokine inhibitor, VCCI                                                                                                                                                                            SCOP domains
               CATH domains 1cq3B00 B:1-224 Viral Chemokine Inhibitor; Chain A                                                                                                                                                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............ee.eeeeeeeeeee............eeeeee......eeeee...eeeeeeee..eeeeeeee......eeeeeee..eeeeeee............eehhhhhhhhhhheeeeeeee.............................eeeeeee...eeeeeeeeeeee.........eeeeeeee..eee..........hhhhhee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cq3 B   1 SFSSSSSCTEEENKHHMGIDVIIKVTKQDQTPTNDKICQSVTEVTESEDESEEVVKGDPTTYYTVVGGGLTMDFGFTKCPKISSISEYSDGNTVNARLSSVSPGQGKDSPAITREEALSMIKDCEMSINIKCSEEEKDSNIKTHPVLGSNISHKKVSYEDIIGSTIVDTKCVKNLEISVRIGDMCKESSELEVKDGFKYVDGSASEDAADDTSLINSAKLIACV 224
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1CQ3)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1CQ3)

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  1cq3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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