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(-) Description

Title :  STRUCTURE OF L-ASPARTATE OXIDASE: IMPLICATIONS FOR THE SUCCINATE DEHYDROGENASE/ FUMARATE REDUCATSE FAMILY
 
Authors :  A. Mattevi
Date :  29 Mar 99  (Deposition) - 23 Jun 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Flavoenzyme, Nad Biosynthesis, Fad, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Mattevi, G. Tedeschi, L. Bacchella, A. Coda, A. Negri, S. Ronchi
Structure Of L-Aspartate Oxidase: Implications For The Succinate Dehydrogenase/Fumarate Reductase Oxidoreductase Family.
Structure Fold. Des. V. 7 745 1999
PubMed-ID: 10425677  |  Reference-DOI: 10.1016/S0969-2126(99)80099-9
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (L-ASPARTATE OXIDASE)
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: NADB
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1CHU)

(-) Sites  (0, 0)

(no "Site" information available for 1CHU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1CHU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1CHU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1CHU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1CHU)

(-) Exons   (0, 0)

(no "Exon" information available for 1CHU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:478
 aligned with NADB_ECOLI | P10902 from UniProtKB/Swiss-Prot  Length:540

    Alignment length:532
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531  
           NADB_ECOLI     2 NTLPEHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERSNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVARAIDHEMKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMPYAHDISTLPPWDESRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYPELLTHSGPSILSP 533
               SCOP domains d1chua2 A:2-237,A:354-422 L-aspartate oxid             ase                                                                                                                                                                                  d1chua3 A:238-353 L-aspartate oxidase                                                                               d1chua2 A:2-237,A:354-422 L-aspartate oxidase                        d1chua1 A:423-533 L-aspartate oxidase                                                                           SCOP domains
               CATH domains 1chuA01 A:2-239,A:355-410  [code=3.50.50.6             0, no name defined]                                                                                                                                                                    -----1chuA02 A:245-348 Flavocytochrome C3; Chain A, domain 1                                                 ------1chuA01 A:2-239,A:355-410                                  ---------------1chuA03 A:429-516  [code=1.20.58.100, no name defined]                                  ----------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee...hhhhhhhhhh.....eeee.......-------------...hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh...--------------------------------------...hhhhhh...eeee..eeeeeee.hhh..........eeeeee....eeeeee..eeee.....hhh......hhh...hhhhhhhhh.........eeee...............hhhhh...eee.......hhh....hhh..hhhhhhhhhhhhhh.....eeee.....hhhhhhh.hhhhhhhhhh........eee..eeeee................eee.hhh.............hhhhhhhhhhhhhhhhhhhh.---................hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh........................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1chu A   2 NTLPEHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTE-------------FDETDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVL--------------------------------------TTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVARAIDHEMKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRM---HDISTLPPWDESRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYPELLTHSGPSILSP 533
                                    11        21        31        41 |       -     |  61        71        81        91       101 |       -         -         -         -|      151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401        |-  |    421       431       441       451       461       471       481       491       501       511       521       531  
                                                                    43            57                                           103                                    142                                                                                                                                                                                                                                                                         410 414
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 3)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1CHU)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)
Chain A   (NADB_ECOLI | P10902)
molecular function
    GO:0008734    L-aspartate oxidase activity    Catalysis of the reaction: L-aspartate + O2 = iminosuccinate + hydrogen peroxide.
    GO:0044318    L-aspartate:fumarate oxidoreductase activity    Catalysis of the reaction: L-aspartate + fumarate = alpha-iminosuccinate + succinate.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0034628    'de novo' NAD biosynthetic process from aspartate    The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide (NAD), beginning with the synthesis of aspartate from simpler precursors; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH.
    GO:0009435    NAD biosynthetic process    The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0019363    pyridine nucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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 Related Entries

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        NADB_ECOLI | P10902: 1knp 1knr

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