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(-) Description

Title :  ACTIVATED RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) COMPLEXED WITH THE REACTION INTERMEDIATE ANALOGUE 2-CARBOXYARABINITOL 1,5-BISPHOSPHATE
 
Authors :  H. Sugawara, H. Yamamoto, N. Shibata, T. Inoue, C. Miyake, A. Yokota, Y.
Date :  29 Sep 98  (Deposition) - 27 Sep 99  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,C,E,G,S,U,W,Y
Biol. Unit 1:  A,C,E,G,S,U,W,Y  (2x)
Keywords :  Carbon Dioxide Fixation, Complex (Rubisco-Reaction Intermediate), High Specificity Factor, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Sugawara, H. Yamamoto, N. Shibata, T. Inoue, S. Okada, C. Miyake, A. Yokota, Y. Kai
Crystal Structure Of Carboxylase Reaction-Oriented Ribulose 1, 5-Bisphosphate Carboxylase/Oxygenase From A Thermophilic Red Alga, Galdieria Partita.
J. Biol. Chem. V. 274 15655 1999
PubMed-ID: 10336462  |  Reference-DOI: 10.1074/JBC.274.22.15655
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE)
    Chains: A, C, E, G
    EC Number: 4.1.1.39
    Organelle: CHLOROPLAST
    Organism Scientific: GALDIERIA PARTITA
    Organism Taxid: 83374
    Other Details: THE ENZYME IS COMPLEXED WITH CARBON DIOXIDE, MG2+ AND REACTION INTERMEDIATE ANALOGUE, 2-CARBOXYARABINITOL 1,5-BISPHOSPHATE. RESIDUE 201, KCX, OF THE LARGE SUBUNIT IS A LYS CARBAMYLATED AT THE EPSILON-AMINO GROUP
    Synonym: RUBISCO
 
Molecule 2 - PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE)
    Chains: S, U, W, Y
    EC Number: 4.1.1.39
    Organelle: CHLOROPLAST
    Organism Scientific: GALDIERIA PARTITA
    Organism Taxid: 83374
    Other Details: THE ENZYME IS COMPLEXED WITH CARBON DIOXIDE, MG2+ AND REACTION INTERMEDIATE ANALOGUE, 2-CARBOXYARABINITOL 1,5-BISPHOSPHATE. RESIDUE 201, KXC, OF THE LARGE SUBUNIT IS A LYS CARBAMYLATED AT THE EPSILON-AMINO GROUP
    Synonym: RUBISCO

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ACEGSUWY
Biological Unit 1 (2x): ACEGSUWY

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1CAP4Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2KCX4Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MG4Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1CAP8Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2KCX8Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREKCX A:201 , ASP A:203 , GLU A:204 , CAP A:491BINDING SITE FOR RESIDUE MG A 490
02AC2SOFTWAREKCX C:201 , ASP C:203 , GLU C:204 , CAP C:491BINDING SITE FOR RESIDUE MG C 490
03AC3SOFTWAREKCX E:201 , ASP E:203 , GLU E:204 , CAP E:491BINDING SITE FOR RESIDUE MG E 490
04AC4SOFTWARETHR G:173 , KCX G:201 , ASP G:203 , GLU G:204 , CAP G:491BINDING SITE FOR RESIDUE MG G 490
05AC5SOFTWARETHR A:173 , LYS A:175 , LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , HIS A:294 , ARG A:295 , HIS A:327 , LYS A:334 , LEU A:335 , SER A:379 , GLY A:380 , GLY A:381 , GLY A:403 , GLY A:404 , MG A:490 , HOH A:518 , HOH A:554 , HOH A:561 , HOH A:565 , HOH A:572 , HOH A:584 , GLU C:60 , THR C:65 , TRP C:66 , ASN C:123BINDING SITE FOR RESIDUE CAP A 491
06AC6SOFTWAREGLU A:60 , THR A:65 , TRP A:66 , ASN A:123 , THR C:173 , LYS C:175 , LYS C:177 , KCX C:201 , ASP C:203 , GLU C:204 , HIS C:294 , ARG C:295 , HIS C:327 , LYS C:334 , LEU C:335 , SER C:379 , GLY C:380 , GLY C:381 , GLY C:403 , GLY C:404 , MG C:490 , HOH C:525 , HOH C:555 , HOH C:564 , HOH C:575 , HOH C:580BINDING SITE FOR RESIDUE CAP C 491
07AC7SOFTWARETHR E:173 , LYS E:175 , LYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , HIS E:294 , ARG E:295 , HIS E:327 , LYS E:334 , LEU E:335 , SER E:379 , GLY E:380 , GLY E:381 , GLY E:403 , GLY E:404 , MG E:490 , HOH E:520 , HOH E:555 , HOH E:562 , HOH E:566 , HOH E:572 , HOH E:580 , GLU G:60 , THR G:65 , TRP G:66 , ASN G:123BINDING SITE FOR RESIDUE CAP E 491
08AC8SOFTWAREGLU E:60 , THR E:65 , TRP E:66 , ASN E:123 , THR G:173 , LYS G:175 , LYS G:177 , KCX G:201 , ASP G:203 , GLU G:204 , HIS G:294 , ARG G:295 , HIS G:327 , LYS G:334 , LEU G:335 , SER G:379 , GLY G:380 , GLY G:381 , GLY G:403 , GLY G:404 , MG G:490 , HOH G:525 , HOH G:555 , HOH G:564 , HOH G:577 , HOH G:581BINDING SITE FOR RESIDUE CAP G 491
09MGAAUTHORKCX A:201 , ASP A:203 , GLU A:204 , CAP A:491MG BINDING SITE CHAIN A
10MGCAUTHORKCX E:201 , ASP E:203 , GLU E:204 , CAP C:491MG BINDING SITE CHAIN C
11MGEAUTHORKCX E:201 , ASP E:203 , GLU E:204 , CAP E:491MG BINDING SITE CHAIN E
12MGGAUTHORKCX G:201 , ASP G:203 , GLU G:204 , CAP G:491MG BINDING SITE CHAIN G

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1BWV)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Lys A:175 -Pro A:176
2Lys C:175 -Pro C:176
3Lys E:175 -Pro E:176
4Lys G:175 -Pro G:176

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BWV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1BWV)

(-) Exons   (0, 0)

(no "Exon" information available for 1BWV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:472
 aligned with O98949_9RHOD | O98949 from UniProtKB/TrEMBL  Length:493

    Alignment length:472
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484  
        O98949_9RHOD     15 RIKNSRYESGVIPYAKMGYWNPDYQVKDTDVLALFRVTPQPGVDPIEAAAAVAGESSTATWTVVWTDLLTAADLYRAKAYKVDQVPNNPEQYFAYIAYELDLFEEGSIANLTASIIGNVFGFKAVKALRLEDMRLPLAYLKTFQGPATGVILERERLDKFGRPLLGCTTKPKLGLSGKNYGRVVYEALKGGLDFVKDDENINSQPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATMEEMYARANFAKELGSVIIMIDLVIGYTAIQTMAKWARDNDMILHLHRAGNSTYSRQKNHGMNFRVICKWMRMAGVDHIHAGTVVGKLEGDPIITRGFYKTLLLPKLERNLQEGLFFDMEWASLRKVMPVASGGIHAGQMHQLIHYLGEDVVLQFGGGTIGHPDGIQAGATANRVALEAMILARNENRDYLTEGPEILREAAKTCGALRTALDLWKDITFNYTSTDTSDFV  486
               SCOP domains d1bwva2 A:7-149 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                 d1bwva1 A:150-478 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ---------------1bwvA01 A:22-148  [code=3.30.70.150, no name defined]                                                                           1bwvA02 A:149-462 Rubisco                                                                                                                                                                                                                                                                                                ---------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............................eeeeeeee......hhhhhhhhhhh.........hhhhh..hhhh..eeeeeee......eeeeeeee.hhh.....hhhhhhhh...hhh.....eeeeeeee..hhhhhh......hhhhhhhhh......eee..........hhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhh....eeeeehhh.hhhhhhhhhhhhhh..eeeee...hhhhh........hhhhhhhhhhh...eee...........hhhhhhhhhhhh........................eeeee.......hhhhhhhh...eeee..hhhh.....hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1bwv A    7 RIKNSRYESGVIPYAKMGYWNPDYQVKDTDVLALFRVTPQPGVDPIEAAAAVAGESSTATWTVVWTDLLTAADLYRAKAYKVDQVPNNPEQYFAYIAYELDLFEEGSIANLTASIIGNVFGFKAVKALRLEDMRLPLAYLKTFQGPATGVILERERLDKFGRPLLGCTTKPKLGLSGKNYGRVVYEALKGGLDFVkDDENINSQPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATMEEMYARANFAKELGSVIIMIDLVIGYTAIQTMAKWARDNDMILHLHRAGNSTYSRQKNHGMNFRVICKWMRMAGVDHIHAGTVVGKLEGDPIITRGFYKTLLLPKLERNLQEGLFFDMEWASLRKVMPVASGGIHAGQMHQLIHYLGEDVVLQFGGGTIGHPDGIQAGATANRVALEAMILARNENRDYLTEGPEILREAAKTCGALRTALDLWKDITFNYTSTDTSDFV  478
                                    16      | 25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195     | 205       215       225       235       245       255       265  ||   276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476  
                                          22A                                                                                                                                                                                201-KCX                                                            268|                                                                                                                                                                                                                
                                                                                                                                                                                                                                                                                                 270                                                                                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:472
 aligned with O98949_9RHOD | O98949 from UniProtKB/TrEMBL  Length:493

    Alignment length:472
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484  
        O98949_9RHOD     15 RIKNSRYESGVIPYAKMGYWNPDYQVKDTDVLALFRVTPQPGVDPIEAAAAVAGESSTATWTVVWTDLLTAADLYRAKAYKVDQVPNNPEQYFAYIAYELDLFEEGSIANLTASIIGNVFGFKAVKALRLEDMRLPLAYLKTFQGPATGVILERERLDKFGRPLLGCTTKPKLGLSGKNYGRVVYEALKGGLDFVKDDENINSQPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATMEEMYARANFAKELGSVIIMIDLVIGYTAIQTMAKWARDNDMILHLHRAGNSTYSRQKNHGMNFRVICKWMRMAGVDHIHAGTVVGKLEGDPIITRGFYKTLLLPKLERNLQEGLFFDMEWASLRKVMPVASGGIHAGQMHQLIHYLGEDVVLQFGGGTIGHPDGIQAGATANRVALEAMILARNENRDYLTEGPEILREAAKTCGALRTALDLWKDITFNYTSTDTSDFV  486
               SCOP domains d1bwvc2 C:7-149 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                 d1bwvc1 C:150-478 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ---------------1bwvC01 C:22-148  [code=3.30.70.150, no name defined]                                                                           1bwvC02 C:149-462 Rubisco                                                                                                                                                                                                                                                                                                ---------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............................eeeeeeee......hhhhhhhhhhh.........hhhhh..hhhh..eeeeeee......eeeeeeee.hhh.....hhhhhhhh...hhh.....eeeeeeee..hhhhhh......hhhhhhhhh......eee..........hhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhh....eeeeehhh.hhhhhhhhhhhhh...eeeee...hhhhh........hhhhhhhhhhh...eee...........hhhhhhhhhhhh........................eeeee.......hhhhhhhh...eeee..hhhh.....hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1bwv C    7 RIKNSRYESGVIPYAKMGYWNPDYQVKDTDVLALFRVTPQPGVDPIEAAAAVAGESSTATWTVVWTDLLTAADLYRAKAYKVDQVPNNPEQYFAYIAYELDLFEEGSIANLTASIIGNVFGFKAVKALRLEDMRLPLAYLKTFQGPATGVILERERLDKFGRPLLGCTTKPKLGLSGKNYGRVVYEALKGGLDFVkDDENINSQPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATMEEMYARANFAKELGSVIIMIDLVIGYTAIQTMAKWARDNDMILHLHRAGNSTYSRQKNHGMNFRVICKWMRMAGVDHIHAGTVVGKLEGDPIITRGFYKTLLLPKLERNLQEGLFFDMEWASLRKVMPVASGGIHAGQMHQLIHYLGEDVVLQFGGGTIGHPDGIQAGATANRVALEAMILARNENRDYLTEGPEILREAAKTCGALRTALDLWKDITFNYTSTDTSDFV  478
                                    16      | 25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195     | 205       215       225       235       245       255       265  ||   276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476  
                                          22A                                                                                                                                                                                201-KCX                                                            268|                                                                                                                                                                                                                
                                                                                                                                                                                                                                                                                                 270                                                                                                                                                                                                                


Chain E from PDB  Type:PROTEIN  Length:472
 aligned with O98949_9RHOD | O98949 from UniProtKB/TrEMBL  Length:493

    Alignment length:472
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484  
        O98949_9RHOD     15 RIKNSRYESGVIPYAKMGYWNPDYQVKDTDVLALFRVTPQPGVDPIEAAAAVAGESSTATWTVVWTDLLTAADLYRAKAYKVDQVPNNPEQYFAYIAYELDLFEEGSIANLTASIIGNVFGFKAVKALRLEDMRLPLAYLKTFQGPATGVILERERLDKFGRPLLGCTTKPKLGLSGKNYGRVVYEALKGGLDFVKDDENINSQPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATMEEMYARANFAKELGSVIIMIDLVIGYTAIQTMAKWARDNDMILHLHRAGNSTYSRQKNHGMNFRVICKWMRMAGVDHIHAGTVVGKLEGDPIITRGFYKTLLLPKLERNLQEGLFFDMEWASLRKVMPVASGGIHAGQMHQLIHYLGEDVVLQFGGGTIGHPDGIQAGATANRVALEAMILARNENRDYLTEGPEILREAAKTCGALRTALDLWKDITFNYTSTDTSDFV  486
               SCOP domains d1bwve2 E:7-149 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                 d1bwve1 E:150-478 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ---------------1bwvE01 E:22-148  [code=3.30.70.150, no name defined]                                                                           1bwvE02 E:149-462 Rubisco                                                                                                                                                                                                                                                                                                ---------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............................eeeeeeee......hhhhhhhhhhh.........hhhhh..hhhh..eeeeeee......eeeeeeee.hhh.....hhhhhhhh...hhh.....eeeeeeee..hhhhhh......hhhhhhhhh......eee..........hhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhh....eeeeehhh.hhhhhhhhhhhhhh..eeeee...hhhhh........hhhhhhhhhhh...eee...........hhhhhhhhhhhh........................eeeee.......hhhhhhhh...eeee..hhhh.....hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1bwv E    7 RIKNSRYESGVIPYAKMGYWNPDYQVKDTDVLALFRVTPQPGVDPIEAAAAVAGESSTATWTVVWTDLLTAADLYRAKAYKVDQVPNNPEQYFAYIAYELDLFEEGSIANLTASIIGNVFGFKAVKALRLEDMRLPLAYLKTFQGPATGVILERERLDKFGRPLLGCTTKPKLGLSGKNYGRVVYEALKGGLDFVkDDENINSQPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATMEEMYARANFAKELGSVIIMIDLVIGYTAIQTMAKWARDNDMILHLHRAGNSTYSRQKNHGMNFRVICKWMRMAGVDHIHAGTVVGKLEGDPIITRGFYKTLLLPKLERNLQEGLFFDMEWASLRKVMPVASGGIHAGQMHQLIHYLGEDVVLQFGGGTIGHPDGIQAGATANRVALEAMILARNENRDYLTEGPEILREAAKTCGALRTALDLWKDITFNYTSTDTSDFV  478
                                    16      | 25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195     | 205       215       225       235       245       255       265  ||   276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476  
                                          22A                                                                                                                                                                                201-KCX                                                            268|                                                                                                                                                                                                                
                                                                                                                                                                                                                                                                                                 270                                                                                                                                                                                                                


Chain G from PDB  Type:PROTEIN  Length:472
 aligned with O98949_9RHOD | O98949 from UniProtKB/TrEMBL  Length:493

    Alignment length:472
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484  
        O98949_9RHOD     15 RIKNSRYESGVIPYAKMGYWNPDYQVKDTDVLALFRVTPQPGVDPIEAAAAVAGESSTATWTVVWTDLLTAADLYRAKAYKVDQVPNNPEQYFAYIAYELDLFEEGSIANLTASIIGNVFGFKAVKALRLEDMRLPLAYLKTFQGPATGVILERERLDKFGRPLLGCTTKPKLGLSGKNYGRVVYEALKGGLDFVKDDENINSQPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATMEEMYARANFAKELGSVIIMIDLVIGYTAIQTMAKWARDNDMILHLHRAGNSTYSRQKNHGMNFRVICKWMRMAGVDHIHAGTVVGKLEGDPIITRGFYKTLLLPKLERNLQEGLFFDMEWASLRKVMPVASGGIHAGQMHQLIHYLGEDVVLQFGGGTIGHPDGIQAGATANRVALEAMILARNENRDYLTEGPEILREAAKTCGALRTALDLWKDITFNYTSTDTSDFV  486
               SCOP domains d1bwvg2 G:7-149 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                 d1bwvg1 G:150-478 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ---------------1bwvG01 G:22-148  [code=3.30.70.150, no name defined]                                                                           1bwvG02 G:149-462 Rubisco                                                                                                                                                                                                                                                                                                ---------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............................eeeeeeee......hhhhhhhhhhh.........hhhhh..hhhh..eeeeeee......eeeeeeee.hhh.....hhhhhhhh...hhh.....eeeeeeee..hhhhhh......hhhhhhhhh......eee..........hhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhh....eeeeehhh.hhhhhhhhhhhhh...eeeee...hhhhh........hhhhhhhhhhh...eee...........hhhhhhhhhhhh........................eeeee.......hhhhhhhh...eeee..hhhh.....hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1bwv G    7 RIKNSRYESGVIPYAKMGYWNPDYQVKDTDVLALFRVTPQPGVDPIEAAAAVAGESSTATWTVVWTDLLTAADLYRAKAYKVDQVPNNPEQYFAYIAYELDLFEEGSIANLTASIIGNVFGFKAVKALRLEDMRLPLAYLKTFQGPATGVILERERLDKFGRPLLGCTTKPKLGLSGKNYGRVVYEALKGGLDFVkDDENINSQPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATMEEMYARANFAKELGSVIIMIDLVIGYTAIQTMAKWARDNDMILHLHRAGNSTYSRQKNHGMNFRVICKWMRMAGVDHIHAGTVVGKLEGDPIITRGFYKTLLLPKLERNLQEGLFFDMEWASLRKVMPVASGGIHAGQMHQLIHYLGEDVVLQFGGGTIGHPDGIQAGATANRVALEAMILARNENRDYLTEGPEILREAAKTCGALRTALDLWKDITFNYTSTDTSDFV  478
                                    16      | 25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195     | 205       215       225       235       245       255       265  ||   276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476  
                                          22A                                                                                                                                                                                201-KCX                                                            268|                                                                                                                                                                                                                
                                                                                                                                                                                                                                                                                                 270                                                                                                                                                                                                                


Chain S from PDB  Type:PROTEIN  Length:138
 aligned with O98950_9RHOD | O98950 from UniProtKB/TrEMBL  Length:138

    Alignment length:138
                                    10        20        30        40        50        60        70        80        90       100       110       120       130        
        O98950_9RHOD      1 MRITQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRPKHEPGFNLMRQEDKSRSIKYTIHSYESYKPEDERY  138
               SCOP domains d1bwvs_ S: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                 SCOP domains
               CATH domains 1bwvS00 S:8-155  [code=3.30.190.10, no name defined]                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhh...eeeeeee......................hhhhhhhhhhhhhh....eeeeeee..........eeeeee.......eeeeeee.....eeeeeeehhhh..hhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1bwv S    8 VRITQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRPKHEPGFNLMRQEDKSRSIKYTIHSYESYKPEDERY  155
                                    17        27        37        47   ||   69        79        89        99      107B       117       127       137       147        
                                                                      51|                                        107A|                                                
                                                                       64                                         107B                                                


Chain U from PDB  Type:PROTEIN  Length:138
 aligned with O98950_9RHOD | O98950 from UniProtKB/TrEMBL  Length:138

    Alignment length:138
                                    10        20        30        40        50        60        70        80        90       100       110       120       130        
        O98950_9RHOD      1 MRITQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRPKHEPGFNLMRQEDKSRSIKYTIHSYESYKPEDERY  138
               SCOP domains d1bwvu_ U: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                 SCOP domains
               CATH domains 1bwvU00 U:8-155  [code=3.30.190.10, no name defined]                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhh...eeeeeee......................hhhhhhhhhhhhhh....eeeeeee..........eeeeee.......eeeeeee.....eeeeeeehhhh..hhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1bwv U    8 VRITQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRPKHEPGFNLMRQEDKSRSIKYTIHSYESYKPEDERY  155
                                    17        27        37        47   ||   69        79        89        99      107B       117       127       137       147        
                                                                      51|                                        107A|                                                
                                                                       64                                         107B                                                


Chain W from PDB  Type:PROTEIN  Length:138
 aligned with O98950_9RHOD | O98950 from UniProtKB/TrEMBL  Length:138

    Alignment length:138
                                    10        20        30        40        50        60        70        80        90       100       110       120       130        
        O98950_9RHOD      1 MRITQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRPKHEPGFNLMRQEDKSRSIKYTIHSYESYKPEDERY  138
               SCOP domains d1bwvw_ W: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                 SCOP domains
               CATH domains 1bwvW00 W:8-155  [code=3.30.190.10, no name defined]                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhh...eeeeeee......................hhhhhhhhhhhhhh....eeeeeee..........eeeeee.......eeeeeee.....eeeeeeehhhh..hhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1bwv W    8 VRITQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRPKHEPGFNLMRQEDKSRSIKYTIHSYESYKPEDERY  155
                                    17        27        37        47   ||   69        79        89        99      107B       117       127       137       147        
                                                                      51|                                        107A|                                                
                                                                       64                                         107B                                                


Chain Y from PDB  Type:PROTEIN  Length:138
 aligned with O98950_9RHOD | O98950 from UniProtKB/TrEMBL  Length:138

    Alignment length:138
                                    10        20        30        40        50        60        70        80        90       100       110       120       130        
        O98950_9RHOD      1 MRITQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRPKHEPGFNLMRQEDKSRSIKYTIHSYESYKPEDERY  138
               SCOP domains d1bwvy_ Y: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                 SCOP domains
               CATH domains 1bwvY00 Y:8-155  [code=3.30.190.10, no name defined]                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhh...eeeeeee......................hhhhhhhhhhhhhh....eeeeeee..........eeeeee.......eeeeeee.....eeeeeeehhhh..hhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1bwv Y    8 VRITQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRPKHEPGFNLMRQEDKSRSIKYTIHSYESYKPEDERY  155
                                    17        27        37        47   ||   69        79        89        99      107B       117       127       137       147        
                                                                      51|                                        107A|                                                
                                                                       64                                         107B
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BWV)

(-) Gene Ontology  (7, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G   (O98949_9RHOD | O98949)
molecular function
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016984    ribulose-bisphosphate carboxylase activity    Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate.
biological process
    GO:0015977    carbon fixation    A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Chain S,U,W,Y   (O98950_9RHOD | O98950)
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

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  1bwv
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O98949_9RHOD | O98949: 1iwa
        O98950_9RHOD | O98950: 1iwa

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1BWV)