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(-) Description

Title :  A SINGLE-CHAIN T CELL RECEPTOR
 
Authors :  B. J. Hare, D. F. Wyss, E. L. Reinherz, G. Wagner
Date :  23 Sep 98  (Deposition) - 22 Jul 99  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (15x)
Keywords :  Immunoglobulin, Immunoreceptor, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. J. Hare, D. F. Wyss, M. S. Osburne, P. S. Kern, E. L. Reinherz, G. Wagner
Structure, Specificity And Cdr Mobility Of A Class Ii Restricted Single-Chain T-Cell Receptor.
Nat. Struct. Biol. V. 6 574 1999
PubMed-ID: 10360364  |  Reference-DOI: 10.1038/9359
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (ALPHA-BETA T CELL RECEPTOR (TCR) (D10))
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Cellular Location: CYTOPLASMIC INCLUSION BODIES
    Expression System Plasmid: PET11A
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Fragment: VARIABLE DOMAINS FROM ALPHA AND BETA CHAINS
    Mutation: YES
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: 27-RESIDUE HYDROPHILIC LINKER CONNECTS C TERMINUS OF BETA DOMAIN WITH N TERMINUS OF ALPHA DOMAIN
    Other Details - Source: SYNTHETIC GENE CONNECTS ALPHA AND BETA DOMAINS

 Structural Features

(-) Chains, Units

  
NMR Structure (15x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1BWM)

(-) Sites  (0, 0)

(no "Site" information available for 1BWM)

(-) SS Bonds  (2, 2)

NMR Structure
No.Residues
1A:23 -A:92
2A:322 -A:390

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1BWM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BWM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1BWM)

(-) Exons   (0, 0)

(no "Exon" information available for 1BWM)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:249
 aligned with Q5R1G1_MOUSE | Q5R1G1 from UniProtKB/TrEMBL  Length:121

    Alignment length:249
                                                                                                                                               28                                                                                                                                    
                                        1       9                                                 10      18        19    25                 26 |                   29                                                                                         121                   
                                     -  |      8|        -         -         -         -         - |      18        19     |   -         -    | |  -         -       |31        41        51        61        71        81        91       101       111       121         -         
        Q5R1G1_MOUSE      - ------------MDKILTASC--------------------------------------------------LLLGLHLAG---------VSGQQKE------------------KSD--------------------QQQVRQSPQSLTVWEGETTILNCSYEDSTFDYFPWYRQFPGKSPALLIAISLVSNKKEDGRFTIFFNKREKKLSLHITDSQPGDSATYFCAAS-------------------    -
               SCOP domains d1bwma2 A:3-116A T-cell antigen receptor                                                                      ---------------------------d1bwma1 A:301-417 T-cell antigen receptor                                                                        SCOP domains
               CATH domains 1bwmA01 A:3-201 Immunoglobulins                                                                                1bwmA02 A:202-392 Immunoglobulins                                                                                     -------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....eee.......eeee.......eeeee.......eeeee.................eee.....eeeee..........eeeeee............eeee.................................eee...eee.....eeeeee........eeeee.......eeeee.......eee..eeee.......eeeee........eeeeee.............eeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1bwm A    3 AVTQSPRNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGGQGRAEQFFGPGTRLTVLGSDYKDDDDKRSGGGGSGGGGSGGSGAQQQVRQSPQSLTVWEGETTILNCSYEDSTFDYFPWYRQFPGKSPALLIAISLVSNKKEDGRFTIFFNKREKKLSLHITDSQPGDSATYFCAATGSFNKLTFGAGTRLAVSPY  417
                                    12        22        32        42        52        62||      73        83        93     ||107      116A|      210       220      |302       312       322       332       342       352      |363       373       383       393|      408         
                                                                                       63|                                99|         116A|                       227||                                                       359|                             393|                  
                                                                                        65                                104           201                        301|                                                        361                              399                  
                                                                                                                                                                   301A
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BWM)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 1BWM)

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