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(-) Description

Title :  6ALPHA-(HYDROXYPROPYL)PENICILLANATE ACYLATED ON NMC-A BETA-LACTAMASE FROM ENTEROBACTER CLOACAE
 
Authors :  L. Mourey, P. Swaren, K. Miyashita, A. Bulychev, S. Mobashery, J. P. Samama
Date :  04 Sep 98  (Deposition) - 30 Dec 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.89
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Antibiotic Resistance, Class A Carbapenemase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Mourey, P. Swaren, K. Miyashita, A. Bulychev, S. Mobashery, J. P. Samama
Inhibition Of The Nmc-A B-Lactamase By A Penicillanic Acid Derivative, And The Structural Bases For The Increase In Substrate Profile Of This Antibiotic Resistance Enzyme
J. Am. Chem. Soc. V. 120 9382 1998
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NMC-A BETA-LACTAMASE
    Chains: A
    EC Number: 3.5.2.6
    Organism Scientific: ENTEROBACTER CLOACAE
    Organism Taxid: 550
    Other Details: ACYL-ENZYME COMPLEX
    Strain: NOR-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1AP31Ligand/Ion2-(1-CARBOXY-2-HYDROXY-2-METHYL-PROPYL)-5,5-DIMETHYL-THIAZOLIDINE-4-CARBOXYLIC ACID
2MES3Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:70 , LYS A:73 , SER A:130 , ASN A:132 , GLU A:166 , ASN A:170 , THR A:216 , THR A:235 , SER A:237 , HOH A:430 , HOH A:471BINDING SITE FOR RESIDUE AP3 A 292
2AC2SOFTWARETHR A:99 , ARG A:100 , SER A:101 , SER A:224 , TRP A:229 , ILE A:287 , ASP A:288BINDING SITE FOR RESIDUE MES A 301
3AC3SOFTWAREASN A:26 , THR A:27 , LYS A:28 , ARG A:65 , GLU A:177 , LYS A:291 , MES A:303BINDING SITE FOR RESIDUE MES A 302
4AC4SOFTWARELYS A:28 , ARG A:100 , ASN A:136 , GLU A:140 , TRP A:165 , MES A:302BINDING SITE FOR RESIDUE MES A 303

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:69 -A:238

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:166 -Leu A:167

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BUL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1BUL)

(-) Exons   (0, 0)

(no "Exon" information available for 1BUL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:265
 aligned with BLAN_ENTCL | P52663 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:265
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287     
          BLAN_ENTCL     28 NTKGIDEIKNLETDFNGRIGVYALDTGSGKSFSYRANERFPLCSSFKGFLAAAVLKGSQDNRLNLNQIVNYNTRSLEFHSPITTKYKDNGMSLGDMAAAALQYSDNGATNIILERYIGGPEGMTKFMRSIGDEDFRLDRWELDLNTAIPGDERDTSTPAAVAKSLKTLALGNILSEHEKETYQTWLKGNTTGAARIRASVPSDWVVGDKTGSCGAYGTANDYAVVWPKNRAPLIISVYTTKNEKEAKHEDKVIAEASRIAIDNLK  292
               SCOP domains d1bula_ A: beta-Lactamase, class A                                                                                                                                                                                                                                        SCOP domains
               CATH domains 1bulA00 A:26-291 DD-peptidase/beta-lactamase superfamily                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhh..eeeeeeee.....eeee....eee.hhhhhhhhhhhhhhhhh.....................hhhhh.......hhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhh............hhh.........eeehhhhhhhhhhhhh.....hhhhhhhhhhhh........hhhh.....eeeeeeee......eeeeeeee.....eeeeeeeee.........hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1bul A   26 NTKGIDEIKNLETDFNGRIGVYALDTGSGKSFSYRANERFPLCSSFKGFLAAAVLKGSQDNRLNLNQIVNYNTRSLEFHSPITTKYKDNGMSLGDMAAAALQYSDNGATNIILERYIGGPEGMTKFMRSIGDEDFRLDRWELDLNTAIPGDERDTSTPAAVAKSLKTLALGNILSEHEKETYQTWLKGNTTGAARIRASVPSDWVVGDKTGSCGAYGTANDYAVVWPKNRAPLIISVYTTKNEKEAKHEDKVIAEASRIAIDNLK  291
                                    35        45        55 ||     66        76        86        96       106       116       126       136    |  145       155       165       175       185       195       205       215       225       235       245       256       266       276       286     
                                                          57|                                                                              140A                                                                                                              253|                                    
                                                           59                                                                                                                                                                                                 255
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BUL)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (BLAN_ENTCL | P52663)
molecular function
    GO:0008800    beta-lactamase activity    Catalysis of the reaction: a beta-lactam + H2O = a substituted beta-amino acid.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0030655    beta-lactam antibiotic catabolic process    The chemical reactions and pathways resulting in the breakdown of a beta-lactam antibiotic, any member of a class of natural or semisynthetic antibiotics whose characteristic feature is a strained, four-membered beta-lactam ring. They include the penicillins and many of the cephalosporins.
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.

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  1bul
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 Related Entries

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UniProtKB/Swiss-Prot
        BLAN_ENTCL | P52663: 1bue

(-) Related Entries Specified in the PDB File

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