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(-) Description

Title :  THE XRAY STRUCTURE OF A GROWTH HORMONE-PROLACTIN RECEPTOR COMPLEX
 
Authors :  W. Somers, M. Ultsch, A. M. De Vos, A. A. Kossiakoff
Date :  12 Aug 98  (Deposition) - 19 Aug 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hormone, Receptor, Hormone/Growth Factor (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. Somers, M. Ultsch, A. M. De Vos, A. A. Kossiakoff
The X-Ray Structure Of A Growth Hormone-Prolactin Receptor Complex.
Nature V. 372 478 1994
PubMed-ID: 7984244  |  Reference-DOI: 10.1038/372478A0
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (GROWTH HORMONE)
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 2 - PROTEIN (PROLACTIN RECEPTOR)
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:18 , GLU A:174 , ASP B:387 , HIS B:388BINDING SITE FOR RESIDUE ZN A 500
2ZNAAUTHORHIS A:18 , GLU A:174 , ASP B:387 , HIS B:388ZINC BINDING SITE BETWEEN HGH AND PROLACTIN RECEPTOR.

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:53 -A:165
2A:182 -A:189
3B:212 -B:222
4B:251 -B:262

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1BP3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (21, 21)

Asymmetric/Biological Unit (21, 21)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_015802D37NSOMA_HUMANDisease (IGHD1B)  ---AD11N
02UniProtVAR_015803R42CSOMA_HUMANDisease (IGHD1B)71640273AR16C
03UniProtVAR_015804T53ISOMA_HUMANDisease (IGHD1B)  ---AT27I
04UniProtVAR_015805K67RSOMA_HUMANDisease (IGHD1B)  ---AK41R
05UniProtVAR_015806N73DSOMA_HUMANDisease (IGHD1B)71640276AN47D
06UniProtVAR_032702C79SSOMA_HUMANPolymorphism137853222AC53S
07UniProtVAR_015807S97FSOMA_HUMANDisease (IGHD1B)  ---AS71F
08UniProtVAR_015808E100KSOMA_HUMANDisease (IGHD1B)  ---AE74K
09UniProtVAR_015809R103CSOMA_HUMANDisease (KWKS)137853220AR77C
10UniProtVAR_011918S105CSOMA_HUMANPolymorphism6174AS79C
11UniProtVAR_015810Q117LSOMA_HUMANDisease (IGHD1B)  ---AQ91L
12UniProtVAR_015811S134CSOMA_HUMANDisease (IGHD1B)  ---AS108C
13UniProtVAR_015812S134RSOMA_HUMANDisease (IGHD1B)  ---AS108R
14UniProtVAR_011919V136ISOMA_HUMANPolymorphism5388AV110I
15UniProtVAR_015813D138GSOMA_HUMANDisease (KWKS)137853221AD112G
16UniProtVAR_015814T201ASOMA_HUMANDisease (IGHD1B)  ---AT175A
17UniProtVAR_032703I205MSOMA_HUMANPolymorphism148474991AI179M
18UniProtVAR_015815R209HSOMA_HUMANDisease (IGHD2)137853223AR183H
19UniProtVAR_049172I100VPRLR_HUMANPolymorphism2228482BI276V
20UniProtVAR_070894I170LPRLR_HUMANDisease (MFAB)72478580BI346L
21UniProtVAR_070895H212RPRLR_HUMANDisease (HPRL)398122522BH388R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (4, 5)

Asymmetric/Biological Unit (4, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FN3PS50853 Fibronectin type-III domain profile.PRLR_HUMAN27-128
129-229
  2B:203-304
B:305-404
2SOMATOTROPIN_1PS00266 Somatotropin, prolactin and related hormones signature 1.SOMA_HUMAN79-112  1A:53-86
3HEMATOPO_REC_L_F1PS01352 Long hematopoietin receptor, single chain family signature.PRLR_HUMAN147-224  1B:323-400
4SOMATOTROPIN_2PS00338 Somatotropin, prolactin and related hormones signature 2.SOMA_HUMAN191-208  1A:165-182

(-) Exons   (0, 0)

(no "Exon" information available for 1BP3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:186
 aligned with SOMA_HUMAN | P01241 from UniProtKB/Swiss-Prot  Length:217

    Alignment length:190
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216
           SOMA_HUMAN    27 FPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCG 216
               SCOP domains d1bp3a_ A: Growth hormone, somatotropin                                                                                                                                                        SCOP domains
               CATH domains 1bp3A00 A:1-190  [code=1.20.1250.10, no name defined]                                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhh....hhhh............hhhh....hhhhhhhhhhhhhhhhhhhh..hhhhh...........hhhhhhhhhhhhhhhhhhh....................----..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
             SAPs(SNPs) (1) ----------N----C----------I-------------R-----D-----S-----------------F--K--C-C-----------L----------------C-I-G--------------------------------------------------------------A---M---H------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------------------------------------------R---------------------------------------------------------------------------------- SAPs(SNPs) (2)
                PROSITE (2) ----------------------------------------------------SOMATOTROPIN_1  PDB: A:53-86      -------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------SOMATOTROPIN_2    -------- PROSITE (3)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bp3 A   1 FPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEERIQTLMGRLEDGSPRTGQIFKQTYSKFDT----DDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCG 190
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       | -  |    160       170       180       190
                                                                                                                                                                             148  153                                     

Chain B from PDB  Type:PROTEIN  Length:197
 aligned with PRLR_HUMAN | P16471 from UniProtKB/Swiss-Prot  Length:622

    Alignment length:203
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225   
           PRLR_HUMAN    26 LPPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIPS 228
               SCOP domains d1bp3b1 B:202-300 Prolactin r   eceptor                                                            d1bp3b2 B:301-404 Prolactin receptor                                                                     SCOP domains
               CATH domains 1bp3B01 B:202-301 Immunoglobu   lins                                                                1bp3B02 B:302-404 Immunoglobulins                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee......eeeeeee....---...eeeeee..................eeee.........eeeeeee...---......eeeehhh..........................................eeeeeeeee......eeeeee...............eeeeeeeee.................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------V---------------------------------------------------------------------L-----------------------------------------R---------------- SAPs(SNPs)
                PROSITE (1) -FN3  PDB: B:203-304 UniProt: 27-128                                                                   FN3  PDB: B:305-404 UniProt: 129-229                                                                 PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------HEMATOPO_REC_L_F1  PDB: B:323-400 UniProt: 147-224                            ---- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bp3 B 202 LPPGKPEIFKCRSPNKETFTCWWRPGTDG---TNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMMVNATN---SSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIPS 404
                                   211       221        |-  |    241       251       261       271       281 |   | 291       301       311       321       331       341       351       361       371       381       391       401   
                                                      230 234                                              283 287                                                                                                                     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 3)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 3)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BP3)

(-) Gene Ontology  (46, 52)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (SOMA_HUMAN | P01241)
molecular function
    GO:0008083    growth factor activity    The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
    GO:0005131    growth hormone receptor binding    Interacting selectively and non-covalently with the growth hormone receptor.
    GO:0005179    hormone activity    The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects; all bind receptors and trigger some biological process.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005148    prolactin receptor binding    Interacting selectively and non-covalently with the prolactin receptor.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0007259    JAK-STAT cascade    Any process in which STAT proteins (Signal Transducers and Activators of Transcription) and JAK (Janus Activated Kinase) proteins convey a signal to trigger a change in the activity or state of a cell. The JAK-STAT cascade begins with activation of STAT proteins by members of the JAK family of tyrosine kinases, proceeds through dimerization and subsequent nuclear translocation of STAT proteins, and ends with regulation of target gene expression by STAT proteins.
    GO:0060397    JAK-STAT cascade involved in growth hormone signaling pathway    The process in which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of physiological ligands to the growth hormone receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes.
    GO:0070977    bone maturation    A developmental process, independent of morphogenetic (shape) change, that is required for bone to attain its fully functional state.
    GO:0015758    glucose transport    The directed movement of the hexose monosaccharide glucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0060396    growth hormone receptor signaling pathway    The series of molecular signals generated as a consequence of growth hormone receptor binding to its physiological ligand.
    GO:0046427    positive regulation of JAK-STAT cascade    Any process that activates or increases the frequency, rate or extent of the JAK-STAT signaling pathway activity.
    GO:0043406    positive regulation of MAP kinase activity    Any process that activates or increases the frequency, rate or extent of MAP kinase activity.
    GO:0043568    positive regulation of insulin-like growth factor receptor signaling pathway    Any process that increases the frequency, rate or extent of insulin-like growth factor receptor signaling.
    GO:0040018    positive regulation of multicellular organism growth    Any process that activates or increases the frequency, rate or extent of growth of an organism to reach its usual body size.
    GO:0050731    positive regulation of peptidyl-tyrosine phosphorylation    Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine.
    GO:0014068    positive regulation of phosphatidylinositol 3-kinase signaling    Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the phosphatidylinositol 3-kinase cascade.
    GO:0002092    positive regulation of receptor internalization    Any process that activates or increases the frequency, rate or extent of receptor internalization.
    GO:0032355    response to estradiol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Chain B   (PRLR_HUMAN | P16471)
molecular function
    GO:0004896    cytokine receptor activity    Combining with a cytokine and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0042978    ornithine decarboxylase activator activity    Upregulation of the activity of the enzyme ornithine decarboxylase.
    GO:0017046    peptide hormone binding    Interacting selectively and non-covalently with any peptide with hormonal activity in animals.
    GO:0004925    prolactin receptor activity    Combining with prolactin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
    GO:0007259    JAK-STAT cascade    Any process in which STAT proteins (Signal Transducers and Activators of Transcription) and JAK (Janus Activated Kinase) proteins convey a signal to trigger a change in the activity or state of a cell. The JAK-STAT cascade begins with activation of STAT proteins by members of the JAK family of tyrosine kinases, proceeds through dimerization and subsequent nuclear translocation of STAT proteins, and ends with regulation of target gene expression by STAT proteins.
    GO:0060397    JAK-STAT cascade involved in growth hormone signaling pathway    The process in which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of physiological ligands to the growth hormone receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes.
    GO:0042110    T cell activation    The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific.
    GO:0007171    activation of transmembrane receptor protein tyrosine kinase activity    Any process that initiates the activity of the inactive transmembrane receptor protein tyrosine kinase activity.
    GO:0007166    cell surface receptor signaling pathway    A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0007566    embryo implantation    Attachment of the blastocyst to the uterine lining.
    GO:0007595    lactation    The regulated release of milk from the mammary glands and the period of time that a mother lactates to feed her young.
    GO:0060749    mammary gland alveolus development    The progression of the mammary gland alveolus over time, from its formation to its mature state. The mammary gland alveolus is a sac-like structure that is found in the mature gland.
    GO:0060644    mammary gland epithelial cell differentiation    The process in which a relatively unspecialized epithelial cell becomes a more specialized epithelial cell of the mammary gland.
    GO:0061180    mammary gland epithelium development    The process whose specific outcome is the progression of the mammary gland epithelium over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0038161    prolactin signaling pathway    A series of molecular signals initiated by the binding of the peptide hormone prolactin to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0060736    prostate gland growth    The increase in size or mass of the prostate gland where the increase in size or mass has the specific outcome of the progression of the gland, from its formation to its mature state.
    GO:0030155    regulation of cell adhesion    Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix.
    GO:0030856    regulation of epithelial cell differentiation    Any process that modulates the frequency, rate or extent of epithelial cell differentiation.
    GO:0006694    steroid biosynthetic process    The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification.
cellular component
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0031904    endosome lumen    The volume enclosed by the membrane of an endosome.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRLR_HUMAN | P164712lfg 2n7i 3d48 3mzg 3n06 3n0p 3ncb 3ncc 3nce 3ncf 4i18
        SOMA_HUMAN | P012411a22 1axi 1hgu 1huw 1hwg 1hwh 1kf9 3hhr

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1BP3)