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Title :  MOLECULAR MODEL OF THE CATHEPSIN B-LIKE CYSTEINE PROTEASE FROM THE PROTOZOAN PARASITE LEISHMANIA MAJOR, THEORETICAL MODEL
 
Authors :  P. M. Selzer, X. Chen, V. J. Chan, M. Cheng, G. L. Kenyon, I. D. Kuntz, J. A. Sakanari, F. E. Cohen, J. H. Mckerrow
Date :  27 May 98  (Deposition) - 12 Aug 98  (Release) - 01 Apr 03  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Cysteine Protease, Cathepsin B-Like, Papain Like, Occluding Loop (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. M. Selzer, X. Chen, V. J. Chan, M. Cheng, G. L. Kenyon, I. D. Kuntz, J. A. Sakanari, F. E. Cohen, J. H. Mckerrow
Leishmania Major: Molecular Modeling Of Cysteine Proteases And Prediction Of New Nonpeptide Inhibitors.
Exp. Parasitol. V. 87 212 1997
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CATHEPSIN B-LIKE CYSTEINE PROTEASE
    Chains: A
    Organism Scientific: LEISHMANIA MAJOR
    Strain: LV39 (MRHO/SU/59/P)

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1BF7)

(-) Sites  (5, 5)

Theoretical Model (5, 5)
No.NameEvidenceResiduesDescription
1CTnot definedCYS A:29 , HIS A:188 , ASN A:208CATALYTIC TRIAD.
2S1not definedILE A:73 , PRO A:74 , THR A:162 , ALA A:189S1 SITE.
3S1Pnot definedGLU A:19 , TRP A:210S1 PRIME SITE.
4S2not definedTHR A:75 , GLY A:234 , VAL A:236S2 SITE.
5S2Pnot definedHIS A:101 , HIS A:102S2 PRIME SITE, EXOPEPTIDASE ACTIVE SITE OF THE OCCLUDING LOOP.

(-) SS Bonds  (6, 6)

Theoretical Model
No.Residues
1A:14 -A:43
2A:26 -A:69
3A:61 -A:121
4A:62 -A:65
5A:91 -A:125
6A:99 -A:111

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1BF7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BF7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1BF7)

(-) Exons   (0, 0)

(no "Exon" information available for 1BF7)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:244
                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhh..................hhhhhhhhhhhhhhhh..........hhhhhhh.............hhhhhhhhhh.....................................................eeeeee.....hhhhhhhhh..eeeeee..hhhh................eeeeeeeeeeee..eeeeeee...........eeeee....hhh.....eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bf7 A   1 LPEFFDAAEHWPMCLTISEIRDQSNCGSCWAIAAVEAISDRYCTFGGVPDRRMSTSNLLSCCGFICGLGCHGGIPTVAWLWWVWVGIATEDCQPYPFDPCSHHGNSEKYPPCPSTIYDTPKCNTTCERNEMDLVKYKGSTSYSVKGEKELMIELMTNGPLELTMQVYSDFVGYKSGVYKHVLGDFLGGHAVKLVGWGTQDGVPYWKVANSWNTDWGDKGYFLIQRGNNECKIESGGVAGIPAQE 243
                                    10        20        30        40        50        60  |     69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239    
                                                                                        63A
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1BF7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1BF7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BF7)

(-) Gene Ontology  (0, 0)

Theoretical Model(hide GO term definitions)
    (no "Gene Ontology" information available for 1BF7)

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  1bf7
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