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(-) Description

Title :  7-FE FERREDOXIN FROM BACILLUS SCHLEGELII, NMR, MINIMIZED AVERAGE STRUCTURE
 
Authors :  S. Aono, D. Bentrop, I. Bertini, A. Donaire, C. Luchinat, Y. Niikura, A. Rosato
Date :  06 May 98  (Deposition) - 17 Jun 98  (Release) - 24 Mar 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A
Keywords :  Electron Transport, Iron-Sulfur (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Aono, D. Bentrop, I. Bertini, A. Donaire, C. Luchinat, Y. Niikura, A. Rosato
Solution Structure Of The Oxidized Fe7S8 Ferredoxin From The Thermophilic Bacterium Bacillus Schlegelii By 1H Nmr Spectroscopy.
Biochemistry V. 37 9812 1998
PubMed-ID: 9657695  |  Reference-DOI: 10.1021/BI972818B
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 7-FE FERREDOXIN
    Atcc: ATCC 43741
    Chains: A
    Collection: ATCC 43741
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PKKFD54
    Expression System Strain: JM 109
    Expression System Taxid: 562
    Expression System Vector Type: BACTERIUM
    Organism Scientific: BACILLUS SCHLEGELII
    Organism Taxid: 1484

 Structural Features

(-) Chains, Units

  
NMR Structure : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

NMR Structure (2, 2)
No.NameCountTypeFull Name
1F3S1Ligand/IonFE3-S4 CLUSTER
2SF41Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:4 , CYS A:8 , SER A:15 , CYS A:16 , CYS A:49 , ILE A:54BINDING SITE FOR RESIDUE F3S A 78
2AC2SOFTWARETYR A:2 , CYS A:20 , ILE A:34 , CYS A:39 , ILE A:40 , CYS A:42 , CYS A:45BINDING SITE FOR RESIDUE SF4 A 79

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1BD6)

(-) Cis Peptide Bonds  (1, 1)

NMR Structure
No.Residues
1Ala A:14 -Ser A:15

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BD6)

(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
14FE4S_FER_2PS51379 4Fe-4S ferredoxin-type iron-sulfur binding domain profile.FER_HYDSH31-60
1-30		  1A:30-59
-
24FE4S_FER_1PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature.FER_HYDSH40-51  1A:39-50

(-) Exons   (0, 0)

(no "Exon" information available for 1BD6)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:77
 aligned with FER_HYDSH | Q45560 from UniProtKB/Swiss-Prot  Length:78

    Alignment length:77
                                    11        21        31        41        51        61        71       
             FER_HYDSH    2 AYVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFVPEEWKSYIQKNRDFFKK 78
               SCOP domains d1bd6a_ A: Ferredoxin                                                         SCOP domains
               CATH domains 1bd6A00 A:1-77  [code=3.30.70.20, no name defined]                            CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..hhh........hhh.....eee....eee.........hhhhh.hhh..ee.....hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) 4FE4S_FER_2  PDB: -          4FE4S_FER_2  PDB: A:30-59     ------------------ PROSITE (1)
                PROSITE (2) --------------------------------------4FE4S_FER_1 --------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------- Transcript
                  1bd6 A  1 AYVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFVPEEWKSYIQKNRDFFKK 77
                                    10        20        30        40        50        60        70
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BD6)

(-) Gene Ontology  (6, 6)

NMR Structure(hide GO term definitions)
Chain A   (FER_HYDSH | Q45560)
molecular function
    GO:0051538    3 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 3 iron, 4 sulfur (3Fe-4S) cluster; this cluster consists of three iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. It is essentially a 4Fe-4S cluster with one iron missing.
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  1bd6
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 Related Entries

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UniProtKB/Swiss-Prot
        FER_HYDSH | Q45560: 1bc6 1bqx 1bwe

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