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(-) Description

Title :  A PRO TO GLY MUTATION IN THE HINGE OF THE ARABINOSE-BINDING PROTEIN ENHANCES BINDING AND ALTERS SPECIFICITY: SUGAR-BINDING AND CRYSTALLOGRAPHIC STUDIES
 
Authors :  P. S. Vermersch, J. J. G. Tesmer, F. A. Quiocho
Date :  15 Nov 91  (Deposition) - 15 Jan 92  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Binding Proteins (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. S. Vermersch, J. J. Tesmer, D. D. Lemon, F. A. Quiocho
A Pro To Gly Mutation In The Hinge Of The Arabinose-Binding Protein Enhances Binding And Alters Specificity. Sugar-Binding And Crystallographic Studies.
J. Biol. Chem. V. 265 16592 1990
PubMed-ID: 2204627
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - L-ARABINOSE-BINDING PROTEIN
    Chains: A
    Engineered: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ARA1Ligand/IonALPHA-L-ARABINOSE
2ARB1Ligand/IonBETA-L-ARABINOSE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:10 , GLU A:14 , TRP A:16 , ASP A:90 , THR A:147 , ARG A:151 , ASN A:205 , ASN A:232 , ARB A:308 , HOH A:309 , HOH A:310BINDING SITE FOR RESIDUE ARA A 307
2AC2SOFTWARELYS A:10 , GLU A:14 , ASP A:90 , ARG A:151 , MET A:204 , ASN A:205 , ASN A:232 , ARA A:307 , HOH A:309 , HOH A:310BINDING SITE FOR RESIDUE ARB A 308

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1BAP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1BAP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BAP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1BAP)

(-) Exons   (0, 0)

(no "Exon" information available for 1BAP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:305
 aligned with ARAF_ECOLI | P02924 from UniProtKB/Swiss-Prot  Length:329

    Alignment length:305
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324     
           ARAF_ECOLI    25 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKGLGGK 329
               SCOP domains d1bapa_ A: L-arabinose-binding protein                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1bapA01 A:2-108,A:255-285  [code=3.40.50.2300, no name defined]                                            1bapA02 A:109-254,A:286-306  [code=3.40.50.2300, no name defined]                                                                                 1bapA01 A:2-108,A:255-285      1bapA02               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) ..eeeeeee.....hhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhh..eeeeee..............-----hhhhhhhhhhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhhh........eee....hhhhhhhhhhhhhhhh......eeeeee.hhhhhhhhhhhhh......eeeeeeeehhhhhhhhh.....eeeeeee...hhhhhhhhhhhhhhhhh.......eee...eeeee.hhhhhhhhh..... Sec.struct. author (1)
     Sec.struct. author (2) ------------------------------------------------------------------------------------------------------eeeeee----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bap A   2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLGSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKGLGGK 306
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BAP)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (ARAF_ECOLI | P02924)
molecular function
    GO:0048029    monosaccharide binding    Interacting selectively and non-covalently with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides.
    GO:0015407    monosaccharide-transporting ATPase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + monosaccharide(out) = ADP + phosphate + monosaccharide(in). Ribose, xylose, arabinose, galactose and methylgalactoside are imported.
biological process
    GO:0042882    L-arabinose transport    The directed movement of L-arabinose, the L-enantiomer of arabinose, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0008643    carbohydrate transport    The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0030288    outer membrane-bounded periplasmic space    The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARAF_ECOLI | P02924: 1abe 1abf 1apb 2wrz 5abp 6abp 7abp 8abp 9abp

(-) Related Entries Specified in the PDB File

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