1B6D - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Title :   BENCE JONES PROTEIN DEL: AN ENTIRE IMMUNOGLOBULIN KAPPA LIGHT-CHAIN DIMER

Authors :   A. Roussel, S. Spinelli, S. Deret, P. Aucouturier, C. Cambillau

Date :   13 Jan 99 (Deposition) - 27 Jan 99 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.74

Chains :   Asym./Biol. Unit : A,B

Keywords :   Immunoglobulin, Kappa Light-Chain Dimer (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Roussel, S. Spinelli, S. Deret, J. Navaza, P. Aucouturier, C. Cambillau
The Structure Of An Entire Noncovalent Immunoglobulin Kappa Light-Chain Dimer (Bence-Jones Protein) Reveals A Weak And Unusual Constant Domains Association.
Eur. J. Biochem. V. 260 192 1999
PubMed-ID: 10091599 | Reference-DOI: 10.1046/J.1432-1327.1999.00136.X
(for further references see the PDB file header)

Molecule 1 - IMMUNOGLOBULIN
	Chains	:	A, B
	Organ	:	KIDNEY
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	IMMUNOGLOBULIN LIGHT-CHAIN DIMER
	Secretion	:	URINE

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1B6D)

(no "Site" information available for 1B6D)

Asymmetric/Biological Unit

No.	Residues
1	A:23	-	A:88
2	A:134	-	A:194
3	B:23	-	B:88
4	B:134	-	B:194

Asymmetric/Biological Unit

No.	Residues
1	Ser A:7	-	Pro A:8
2	Leu A:94	-	Pro A:95
3	Tyr A:140	-	Pro A:141
4	Ser B:7	-	Pro B:8
5	Leu B:94	-	Pro B:95
6	Tyr B:140	-	Pro B:141

(no "SAP(SNP)/Variant" information available for 1B6D)

(no "PROSITE Motif" information available for 1B6D)

(no "Exon" information available for 1B6D)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains d1b6da1 A:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                 d1b6da2 A:108-212 Immunoglobulin light chain kappa constant domain, CL-kappa                              SCOP domains
               CATH domains 1b6dA01 A:1-107 Immunoglobulins                                                                            1b6dA02 A:108-211 Immunoglobulins                                                                       - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.......eeeeee......eeee.............eeeeee..eeeeee....hhh..eeeeee............eeeee......eeeee...hhhhhh.eeeeeeeee......eeeeeee........eeeee...........eeeeeeeehhhhh...eeeeeeee......eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1b6d A   1 DIQMTQSPSSLSASVGDRVTITCQASQDISSYLNWYQQKPGKAPKLLIHAASSLETGVPSRFSGSGSGTDFSFTISSLQPEDLATYYCQQYDSLPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG 212
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Chain B from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains d1b6db1 B:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                 d1b6db2 B:108-212 Immunoglobulin light chain kappa constant domain, CL-kappa                              SCOP domains
               CATH domains 1b6dB01 B:1-107 Immunoglobulins                                                                            1b6dB02 B:108-211 Immunoglobulins                                                                       - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeee.............eeeeee..eeeeee....hhh.eeeeeee...........eeeee.......eeeee...hhhhhh.eeeeeeeee.......eeeeee........eeeee...........eeeeeeeehhhhhh..eeeeeee.......eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1b6d B   1 DIQMTQSPSSLSASVGDRVTITCQASQDISSYLNWYQQKPGKAPKLLIHAASSLETGVPSRFSGSGSGTDFSFTISSLQPEDLATYYCQQYDSLPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG 212
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Immunoglobulins (2282)

Human (Homo sapiens) (912)

1a	1b6dA02	A:108-211
1b	1b6dB02	B:108-211
1c	1b6dA01	A:1-107
1d	1b6dB01	B:1-107

(no "Pfam Domain" information available for 1B6D)

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1B6D)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Leu A:94 - Pro A:95	[ RasMol ]
		Leu B:94 - Pro B:95	[ RasMol ]
		Ser A:7 - Pro A:8	[ RasMol ]
		Ser B:7 - Pro B:8	[ RasMol ]
		Tyr A:140 - Pro A:141	[ RasMol ]
		Tyr B:140 - Pro B:141	[ RasMol ]

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	1b6d
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Description

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SS Bonds (4, 4)

Cis Peptide Bonds (6, 6)

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