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(-) Description

Title :  CRICKET PARALYSIS VIRUS (CRPV)
 
Authors :  J. G. Tate, L. Liljas, P. D. Scotti, P. D. Christian, T. W. Lin, J. E. Johns
Date :  17 Dec 98  (Deposition) - 09 Aug 99  (Release) - 19 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (60x)
Keywords :  Insect Picorna-Like Virus, Icosahedral Virus, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Tate, L. Liljas, P. Scotti, P. Christian, T. Lin, J. E. Johnson
The Crystal Structure Of Cricket Paralysis Virus: The First View Of A New Virus Family.
Nat. Struct. Biol. V. 6 765 1999
PubMed-ID: 10426956  |  Reference-DOI: 10.1038/11543

(-) Compounds

Molecule 1 - PROTEIN (CRICKET PARALYSIS VIRUS, VP1)
    Chains: A
    Organism Scientific: CRICKET PARALYSIS VIRUS
    Organism Taxid: 12136
    Synonym: CRPV
 
Molecule 2 - PROTEIN (CRICKET PARALYSIS VIRUS, VP2)
    Chains: B
    Organism Scientific: CRICKET PARALYSIS VIRUS
    Organism Taxid: 12136
    Synonym: CRPV
 
Molecule 3 - PROTEIN (CRICKET PARALYSIS VIRUS, VP3)
    Chains: C
    Organism Scientific: CRICKET PARALYSIS VIRUS
    Organism Taxid: 12136
    Synonym: CRPV
 
Molecule 4 - PROTEIN (CRICKET PARALYSIS VIRUS, VP4)
    Chains: D
    Organism Scientific: CRICKET PARALYSIS VIRUS
    Organism Taxid: 12136
    Synonym: CRPV

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (60x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1B35)

(-) Sites  (0, 0)

(no "Site" information available for 1B35)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1B35)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Phe B:102 -Pro B:103

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1B35)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1B35)

(-) Exons   (0, 0)

(no "Exon" information available for 1B35)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:260
 aligned with POLS_CRPVC | P13418 from UniProtKB/Swiss-Prot  Length:895

    Alignment length:260
                                   645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795       805       815       825       835       845       855       865       875       885       895
           POLS_CRPVC   636 VMGEDQQIPRNEAQHGVHPISIDTHRISNNWSPQAMCIGEKIVSIRQLIKRFGIFGDANTLQADGSSFVVAPFTVTSPTKTLTSTRNYTQFDYYYYLYAFWRGSMRIKMVAETQDGTGTPRKKTNFTWFVRMFNSLQDSFNSLISTSSSAVTTTVLPSGTINMGPSTQVIDPTVEGLIEVEVPYYNISHITPAVTIDDGTPSMEDYLKGHSPPCLLTFSPRDSISATNHHITASFMRAPGDDFSFMYLLEVPPLVNVARA 895
               SCOP domains d1b35a_ A: Insect picorna-like virus coat proteins                                                                                                                                                                                                                   SCOP domains
               CATH domains 1b35A00 A:1-260  [code=2.60.120.20, no name defined]                                                                                                                                                                                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhh..................hhhhhh.......hhhh...eee...eee.....eeee....................hhhhhhhh.eee..eeeeeeeeee......eee...eeeeeee.....hhhhhh......eeee...........eeeeee.hhhh.eeeee.....................hhhhhh.....eeeeee.........eeeeeeeeee....eee.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1b35 A   1 VMGEDQQIPRNEAQHGVHPISIDTHRISNNWSPQAMCIGEKVVSIRQLIKRFGIFGDANTLQADGSSFVVAPFTVTSPTKTLTSTRNYTQFDYYYYLYAFWRGSMRIKMVAETQDGTGTPRKKTNFTWFVRMFNSLQDSFNSLISTSSSAVTTTVLPSGTINMGPSTQVIDPTVEGLIEVEVPYYNISHITPAVTIDDGTPSMEDYLKGHSPPCLLTFSPRDSISATNHIITASFMRALGDDFSFMYLLGVPPLVNVARA 260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260


Chain B from PDB  Type:PROTEIN  Length:255
 aligned with POLS_CRPVC | P13418 from UniProtKB/Swiss-Prot  Length:895

    Alignment length:283
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287   
           POLS_CRPVC     8 ENSHIENEDKRLMSEQKEIVHFVSEGITPSTTALPDIVNLSTNYLDMTTREDRIHSIKDFLSGPIIIATNLWSSSDPVEKQLYTANFPEVLISNAMYQDKLKGFVGLRATLVVKVQVNSQPFQQGRLMLQYIPYAQYMPNRVTLINETLQGRSGCPTTDLELSVGTEVEMRIPYVSPHLYYNLITGQGSFGSIYVVVYSQLHDQVSGTGSIEYTVWAHLEDVDVQYPTGANIFTGNSPNYLSIAERIATGDFTETEMRKLWIHKTYLKRPARIYAQAAKELKQ 290
               SCOP domains d1b35b_ B: Insect picorna-like virus coat proteins                                                                                                                                                                                                                                          SCOP domains
               CATH domains 1b35B00 B:16-270  [code=2.60.120.20, no name defined]                                                                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) .......hhh.eeeeee..eeeeee................hhhhh..........hhhh....eeeeeeeee.......------hhhhhh..hhhhhhh....eee.eeeeeeeee.......eeeeeeee.hhh.hhhhhhhh..hhhhh..eeeeee.....eeeeee..................eeeeeeeee..........eeeeeeeeeee..eee...........---------------------------.........-.......... Sec.struct. author (1)
     Sec.struct. author (2) --------------------------------------------------------------------------------eeeeeee---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1b35 B  16 ENSHIENEDKRLTSEQKEIVHFVSEGVTPSTTALPDIVNLSTNYLDKNTREDRIHSIKDFLSRPIIIATNLWSVSDPVEKQLYTANFPEVLISNAMYQDKLKGFVGLRATLVVKVQVNSQPFQQGRLMLQYIPYAQYMPNRVTLINETLQGRSGCPRTDLELSVGTEVEMRIPYVSPHLYYNLITGQGSFGSIYVVVYSQLHDQVSGTGSIEYTVWAHLEDVDVQYPTGANIFTGN---------------------------EAYIKGTSR-YDAAQKAHAA 270
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245     |   -         -         -   |   258 | |   267   
                                                                                                                                                                                                                                                                     251                         252     260 |         
                                                                                                                                                                                                                                                                                                           261         


Chain C from PDB  Type:PROTEIN  Length:282
 aligned with POLS_CRPVC | P13418 from UniProtKB/Swiss-Prot  Length:895

    Alignment length:282
                                   350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620  
           POLS_CRPVC   341 SKPTVQGKIGECKLRGQGRMANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVLSIPNYWDRFTWKTSDVTNTVLWDNYVSPFKVKPYSATITDRFRCTHMGYVANAFTYWRGSIVYTFKFVKTQYHSGRLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTEVSFTVPYIASRPWLYCIRPESSWLSKDNKDGALMYNCVSGIVRVEVLNQLVAAQNVFSEIDVICEVSGGPDLEFAGPTCPSYVPYAGDLTLADTRKIEAERTQEYSNNED 622
               SCOP domains d1b35.1 D:,C: Insect picorna-like virus coat proteins                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1b35C00 C:1-282  [code=2.60.120.20, no name defined]                                                                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............................................hhh........hhhhh...eeeeeeeee.......eeeeee.....eee........eee.hhhhhh.........eeeeeeee......eeeeeeeee.............hhh.eeeeeee....eeeeee................hhh.........hhh...eeeeeeeee..........eeeeeeeeee......................hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1b35 C   1 SKPTVQGKIGECKLRGQGRMANFDGMDMSHKMALSSTNEIETNEGLAGTSLDVMDLSRVLSIPNYWDRFTWKTSDVINTVLWDNYVSPFKVKPYSATITDRFRCTHMGKVANAFTYWRGSMVYTFKFVKTQYHSGRLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTAVSFTVPYIGSRPWLYCIRPESSWLSKDNTDGALMYNCVSGIVRVEVLNQLVAAQNVFSEIDVICEVNGGPDLEFAGPTCPRYVPYAGDFTLADTRKIEAERTQEYSNNED 282
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280  


Chain D from PDB  Type:PROTEIN  Length:57
 aligned with POLS_CRPVC | P13418 from UniProtKB/Swiss-Prot  Length:895

    Alignment length:57
                                   293       303       313       323       333       
           POLS_CRPVC   284 AAKELKQLETNNSPSTALGQISEGLTTLSHIPVLGNIFSTPAWISAKAADLAKLFGF 340
               SCOP domains d1b35.1 D:,C: Insect picorna-like virus coat proteins     SCOP domains
               CATH domains 1b35D00 D:1-57 Cricket Paralysis Virus, Vp4; Chain D      CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh..........hhh................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                 1b35 D   1 AASELKQLETNNSPSTALGQISEGLTTLSHIPVLGNIFSTPAWISAKAADLAKLFGF  57
                                    10        20        30        40        50
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Few Secondary Structures (1120)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1B35)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (POLS_CRPVC | P13418)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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