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(-) Description

Title :  ALCOHOL DEHYDROGENASE FROM DROSOPHILA LEBANONENSIS: TERNARY COMPLEX WITH NAD-CYCLOHEXANONE
 
Authors :  J. Benach, S. Atrian, R. Gonzalez-Duarte, R. Ladenstein
Date :  26 Nov 98  (Deposition) - 26 Nov 99  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Oxidoreductase, Detoxification, Metabolism, Alcohol Dehydrogenase, Drosophila Lebanonensis, Short-Chain Dehydrogenases/Reductases, Ternary Complex, Nad- Cyclohexanone Adduct (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Benach, S. Atrian, R. Gonzalez-Duarte, R. Ladenstein
The Catalytic Reaction And Inhibition Mechanism Of Drosophila Alcohol Dehydrogenase: Observation Of An Enzyme-Bound Nad-Ketone Adduct At 1. 4 A Resolution By X-Ray Crystallography.
J. Mol. Biol. V. 289 335 1999
PubMed-ID: 10366509  |  Reference-DOI: 10.1006/JMBI.1999.2765
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ALCOHOL DEHYDROGENASE
    ChainsA
    EC Number1.1.1.1
    Organism ScientificSCAPTODROSOPHILA LEBANONENSIS
    Organism Taxid7225
    Other DetailsCYCLOHEXANONE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric Unit (4, 4)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2CYH1Ligand/IonCYCLOHEXANONE
3DTT1Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
4NDC1Ligand/IonNICOTINAMIDE ADENINE DINUCLEOTIDE CYCLOHEXANONE
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CYH2Ligand/IonCYCLOHEXANONE
3DTT2Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
4NDC2Ligand/IonNICOTINAMIDE ADENINE DINUCLEOTIDE CYCLOHEXANONE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:2 , THR A:4 , HOH A:306 , HOH A:325BINDING SITE FOR RESIDUE CA A 301
2AC2SOFTWAREALA A:12 , GLY A:15 , GLY A:16 , ILE A:17 , ASP A:37 , TYR A:62 , ASP A:63 , VAL A:64 , GLY A:91 , ALA A:92 , GLY A:93 , LEU A:95 , ILE A:106 , ILE A:136 , CYS A:137 , SER A:138 , THR A:140 , ILE A:145 , TYR A:151 , LYS A:155 , PRO A:181 , GLY A:182 , ILE A:183 , THR A:184 , CYH A:256 , DTT A:257 , HOH A:311 , HOH A:374 , HOH A:406 , HOH A:413 , HOH A:448 , HOH A:469 , HOH A:489 , HOH A:530BINDING SITE FOR RESIDUE NDC A 255
3AC3SOFTWAREGLY A:93 , ILE A:94 , LEU A:95 , HIS A:190 , NDC A:255 , HOH A:402 , HOH A:530BINDING SITE FOR RESIDUE CYH A 256
4AC4SOFTWARETHR A:184 , HIS A:190 , NDC A:255 , HOH A:358 , HOH A:412 , HOH A:530BINDING SITE FOR RESIDUE DTT A 257
5ACAAUTHORSER A:138 , TYR A:151 , LYS A:155CATALYTIC TRIAD
6CAAAUTHORASP A:2 , THR A:4CA2+ BINDING RESIDUES
7NA1AUTHORALA A:13 , GLY A:15 , GLY A:18NAD BINDING MOTIF IN DADHS G(A)XGXXG
8NA2AUTHORALA A:12 , GLY A:16 , GLY A:18NAD BINDING MOTIF IN SDRS GXXXGXG
9NA3AUTHORASP A:37NAD/NADP SELECTIVITY AMINO ACID

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1B2L)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1B2L)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1B2L)

(-) PROSITE Motifs  (1, 1)

Asymmetric Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADH_SHORTPS00061 Short-chain dehydrogenases/reductases family signature.ADH_DROLE138-166  1A:138-166
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADH_SHORTPS00061 Short-chain dehydrogenases/reductases family signature.ADH_DROLE138-166  2A:138-166

(-) Exons   (0, 0)

(no "Exon" information available for 1B2L)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:254
 aligned with ADH_DROLE | P10807 from UniProtKB/Swiss-Prot  Length:254

    Alignment length:254
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250    
            ADH_DROLE     1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIEANKNGAIWKLDLGTLEAIEWTKHWDSHI 254
               SCOP domains d1b2la_ A: Drosophila alcohol dehydrogenase                                                                                                                                                                                                                    SCOP domains
               CATH domains 1b2lA00 A:1-254 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....hhhhhhhhhhhhh...eeeeee....hhhhhhhhhh....eeeeee......hhhhhhhhhhhhhhh....eeee.........hhhhhhhh.hhhhhhhhhhhhhh.hhh....eeeeee..hhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee.............hhh....hhhhhhh.....hhhhhhhhhhhhhh.....eeeee..eeee........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: A:138-166    ---------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1b2l A   1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIEANKNGAIWKLDLGTLEAIEWTKHWDSHI 254
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250    

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1B2L)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A   (ADH_DROLE | P10807)
molecular function
    GO:0004022    alcohol dehydrogenase (NAD) activity    Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006066    alcohol metabolic process    The chemical reactions and pathways involving alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ADH_DROLE | P108071a4u 1b14 1b15 1b16 1sby 3rj5 3rj9

(-) Related Entries Specified in the PDB File

1b14 ALCOHOL DEHYDROGENASE, NAD+ BINARY COMPLEX
1b15 ALCOHOL DEHYDROGENASE, NAD-ACETONE ADDUCT